Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1242054	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1242057	0.89[ASN][1000 genomes]
rs12629688	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1345170	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs1447741	0.83[CHB][hapmap]
rs16853999	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs16854008	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1868174	0.84[CHB][hapmap]
rs1868175	0.81[CHB][hapmap]
rs2121777	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs4839649	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs4839650	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs4839651	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs57630925	0.89[ASN][1000 genomes]
rs57917966	0.89[ASN][1000 genomes]
rs58441250	0.89[ASN][1000 genomes]
rs58652978	0.89[ASN][1000 genomes]
rs60098452	0.89[ASN][1000 genomes]
rs60428559	0.90[ASN][1000 genomes]
rs60633318	0.89[ASN][1000 genomes]
rs61645302	0.89[ASN][1000 genomes]
rs62269851	0.90[ASN][1000 genomes]
rs62269855	0.89[ASN][1000 genomes]
rs62269856	0.89[ASN][1000 genomes]
rs62270560	0.89[ASN][1000 genomes]
rs6440181	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs6774050	0.81[CHB][hapmap]
rs6803893	0.92[CHB][hapmap];0.82[ASN][1000 genomes]
rs7629784	0.89[ASN][1000 genomes]
rs7629855	0.89[ASN][1000 genomes]
rs935519	0.83[CHB][hapmap]
rs935520	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv829745	chr3:143278512-143405626	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143328200-143376200	Weak transcription	Ovary	ovary
2	chr3:143346400-143363200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:143351600-143369800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:143354200-143373600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:143354200-143374000	Weak transcription	Esophagus	oesophagus
6	chr3:143354400-143357400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:143355400-143358400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
8	chr3:143356800-143359800	Weak transcription	Fetal Lung	lung

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