Variant report

Variant	rs153528
Chromosome Location	chr5:151433273-151433274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs150566	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs153953	0.84[AFR][1000 genomes]
rs154683	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs159805	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159806	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs159807	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159810	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs159813	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs159931	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs159933	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs255486	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29657	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29667	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs302389	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs39786	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs707165	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020899	chr5:151412785-151516788	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv526375	chr5:151423814-151438217	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs153528	NMUR2	cis	parietal	SCAN
rs153528	SLC6A7	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151432400-151433600	Weak transcription	Adipose Nuclei	Adipose
2	chr5:151432600-151450000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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