Variant report

Variant	rs1536073
Chromosome Location	chr9:17702074-17702075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1000770	1.00[CEU][hapmap];0.80[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10738482	0.80[JPT][hapmap];0.82[MEX][hapmap]
rs10738485	0.82[MEX][hapmap]
rs10756895	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10810822	0.81[CEU][hapmap];0.82[YRI][hapmap]
rs12341417	0.95[CHB][hapmap]
rs1536067	0.84[CHB][hapmap]
rs2025557	0.95[CHB][hapmap];0.86[MEX][hapmap];0.81[AMR][1000 genomes]
rs2025559	0.90[CHB][hapmap]
rs2147736	0.81[CEU][hapmap];0.82[YRI][hapmap];0.87[EUR][1000 genomes]
rs2182084	0.81[CEU][hapmap];0.86[MEX][hapmap]
rs2182086	0.81[CEU][hapmap];0.80[JPT][hapmap];0.80[EUR][1000 genomes]
rs2182087	0.82[YRI][hapmap];0.83[EUR][1000 genomes]
rs2182090	0.81[CEU][hapmap];0.82[YRI][hapmap];0.87[EUR][1000 genomes]
rs2209434	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2209435	0.81[CEU][hapmap]
rs2209437	0.85[CHB][hapmap];0.81[MEX][hapmap]
rs2209438	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs2209439	0.95[CHB][hapmap]
rs3780232	0.82[MEX][hapmap]
rs3780234	0.81[CEU][hapmap];0.86[MEX][hapmap]
rs3780235	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3780236	0.81[AMR][1000 genomes]
rs3808690	0.92[MKK][hapmap]
rs3808700	1.00[CEU][hapmap];0.91[MEX][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3808708	0.82[MEX][hapmap]
rs3808712	0.82[MEX][hapmap]
rs3808713	0.81[MEX][hapmap]
rs3808714	0.80[JPT][hapmap]
rs3808718	0.81[CEU][hapmap];0.82[MEX][hapmap]
rs3808719	0.80[JPT][hapmap]
rs3808723	0.82[YRI][hapmap];0.82[EUR][1000 genomes]
rs4418424	0.81[CEU][hapmap];0.82[MEX][hapmap];0.82[YRI][hapmap]
rs4578059	0.81[AMR][1000 genomes]
rs7020158	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7021704	0.87[ASN][1000 genomes]
rs7021836	0.81[CEU][hapmap];0.85[MEX][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7031459	0.81[EUR][1000 genomes]
rs717373	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[MEX][hapmap];0.89[MKK][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7850335	0.85[CHB][hapmap]
rs7856894	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7862689	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7866654	0.83[EUR][1000 genomes]
rs7866898	0.82[YRI][hapmap];0.83[EUR][1000 genomes]
rs7870919	0.81[CEU][hapmap];0.81[MEX][hapmap];0.82[YRI][hapmap]
rs7875763	0.81[CEU][hapmap];0.90[CHB][hapmap];0.82[MEX][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs961372	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs998599	1.00[CEU][hapmap];0.80[JPT][hapmap];0.91[MEX][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1016971	chr9:17648242-17720176	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv1021022	chr9:17649360-17723730	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv892675	chr9:17694823-17790526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv466279	chr9:17699981-17726581	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv613705	chr9:17699981-17726581	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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