Variant report

Variant	rs1537341
Chromosome Location	chr6:12903900-12903901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10498680	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11752630	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754198	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1571999	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912234	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916096	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917613	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73726220	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9296522	0.82[ASN][1000 genomes]
rs9472888	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830587	chr6:12769661-12939875	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830588	chr6:12793530-12972493	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12885600-12908800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:12894000-12908800	Weak transcription	Fetal Brain Female	brain
3	chr6:12896600-12904800	Weak transcription	Brain Anterior Caudate	brain
4	chr6:12896600-12911000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:12898000-12907000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:12900200-12905400	Weak transcription	Aorta	Aorta
7	chr6:12901400-12908800	Weak transcription	Brain Germinal Matrix	brain
8	chr6:12903000-12904000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:12903000-12904000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr6:12903200-12904000	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr6:12903200-12904000	Enhancers	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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