Variant report

Variant	rs1537784
Chromosome Location	chr1:76752097-76752098
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:76741346..76744130-chr1:76749152..76752097,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10873874	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11162109	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12403092	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1335862	0.82[JPT][hapmap]
rs1335863	0.80[ASN][1000 genomes]
rs1335864	0.80[ASN][1000 genomes]
rs1360878	0.82[JPT][hapmap]
rs1414480	1.00[CEU][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1414482	0.82[JPT][hapmap]
rs1414483	1.00[CEU][hapmap];0.87[JPT][hapmap];0.81[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1414484	1.00[CEU][hapmap];0.87[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1414485	1.00[CEU][hapmap];0.81[JPT][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1414487	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs1537783	0.81[JPT][hapmap]
rs1570823	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17098538	1.00[CEU][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2065794	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2210831	1.00[CEU][hapmap]
rs2225784	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs2225785	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2392035	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2392037	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34995712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36115631	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3851267	1.00[CEU][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3903914	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs3904687	1.00[CEU][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3920772	1.00[CEU][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs4083857	0.82[JPT][hapmap]
rs4480406	0.82[JPT][hapmap]
rs4607942	0.82[JPT][hapmap]
rs4949702	0.82[JPT][hapmap]
rs6593527	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs6657540	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs6695042	1.00[CEU][hapmap]
rs6701166	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs9437129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9437395	0.82[JPT][hapmap]
rs9437407	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9437408	0.82[JPT][hapmap]
rs945365	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76745600-76761000	Weak transcription	Aorta	Aorta
2	chr1:76745800-76755400	Weak transcription	Fetal Lung	lung
3	chr1:76747400-76756200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:76747600-76756400	Weak transcription	Fetal Brain Male	brain
5	chr1:76747600-76757000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:76747800-76756200	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:76747800-76756400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:76749200-76760000	Enhancers	Primary T cells from cord blood	blood
9	chr1:76750200-76760200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr1:76750400-76752600	Enhancers	Primary T cells fromperipheralblood	blood
11	chr1:76750400-76752600	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr1:76750400-76757200	Enhancers	Fetal Thymus	thymus
13	chr1:76750400-76760200	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr1:76750400-76760600	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr1:76750400-76762000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr1:76750600-76752400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr1:76750600-76752400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr1:76750800-76752600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr1:76750800-76755400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr1:76751000-76755200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr1:76751000-76756400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr1:76751200-76752200	Weak transcription	Left Ventricle	heart
23	chr1:76751200-76755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr1:76751400-76752200	Enhancers	Primary B cells from cord blood	blood
25	chr1:76751400-76752200	Enhancers	Dnd41	blood
26	chr1:76751600-76752200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr1:76751800-76752600	Enhancers	Thymus	Thymus
28	chr1:76751800-76757600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr1:76752000-76755200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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