Variant report

Variant	rs1537810
Chromosome Location	chr1:216790296-216790297
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10735489	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10735490	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10779269	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10863259	0.95[JPT][hapmap]
rs1353706	0.81[CEU][hapmap];0.95[CHB][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1391512	0.95[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1414530	0.82[JPT][hapmap]
rs1419243	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1498276	0.82[JPT][hapmap]
rs1498277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1498279	0.95[CEU][hapmap];0.94[CHB][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1498280	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1498281	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1498282	1.00[CEU][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1498290	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1817998	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1819770	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1826977	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1846228	0.82[JPT][hapmap]
rs1857406	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2050526	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2173374	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4567343	0.82[JPT][hapmap]
rs6604640	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6673566	0.82[JPT][hapmap]
rs6673588	0.82[JPT][hapmap]
rs6673703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7553463	0.82[JPT][hapmap]
rs945451	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1003815	chr1:216504235-216836498	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv535289	chr1:216504235-216836498	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv873178	chr1:216714314-216813244	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216775200-216835400	Weak transcription	Fetal Intestine Small	intestine
2	chr1:216781200-216792200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr1:216784600-216790400	Weak transcription	Colon Smooth Muscle	Colon
4	chr1:216787400-216853800	Weak transcription	Pancreas	Pancrea
5	chr1:216789400-216791200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr1:216789600-216790800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:216789800-216790600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:216789800-216799800	Weak transcription	Left Ventricle	heart
9	chr1:216790000-216790400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:216790000-216790400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr1:216790000-216791000	Enhancers	Psoas Muscle	Psoas
12	chr1:216790200-216790600	Enhancers	Fetal Heart	heart
13	chr1:216790200-216791600	Enhancers	Skeletal Muscle Male	skeletal muscle

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