Variant report
| Variant | rs1538498 |
|---|---|
| Chromosome Location | chr6:128642003-128642004 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:128603000-128642800 | Weak transcription | Fetal Intestine Large | intestine |
| 2 | chr6:128609000-128646000 | Weak transcription | NH-A | brain |
| 3 | chr6:128610800-128643200 | Weak transcription | NHEK | skin |
| 4 | chr6:128621800-128649000 | Weak transcription | HSMMtube | muscle |
| 5 | chr6:128625200-128642600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 6 | chr6:128626000-128643000 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 7 | chr6:128626200-128645800 | Weak transcription | Duodenum Mucosa | Duodenum |
| 8 | chr6:128627800-128642800 | Weak transcription | HSMM | muscle |
| 9 | chr6:128627800-128649000 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
| 10 | chr6:128631400-128645200 | Weak transcription | Muscle Satellite Cultured Cells | -- |
| 11 | chr6:128631600-128648600 | Weak transcription | Fetal Intestine Small | intestine |
| 12 | chr6:128631800-128649000 | Weak transcription | Aorta | Aorta |
| 13 | chr6:128632000-128644800 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 14 | chr6:128632000-128649000 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 15 | chr6:128632000-128650600 | Weak transcription | Psoas Muscle | Psoas |
| 16 | chr6:128632000-128650800 | Weak transcription | Right Ventricle | heart |
| 17 | chr6:128632000-128658000 | Weak transcription | Ovary | ovary |
| 18 | chr6:128632200-128665200 | Weak transcription | Gastric | stomach |
| 19 | chr6:128633600-128649000 | Weak transcription | Fetal Thymus | thymus |
| 20 | chr6:128635600-128672000 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 21 | chr6:128635800-128654200 | Weak transcription | Liver | Liver |
| 22 | chr6:128636000-128643400 | Weak transcription | H1 Cell Line | embryonic stem cell |
| 23 | chr6:128637800-128645000 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 24 | chr6:128639000-128660600 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
| 25 | chr6:128639000-128660800 | Weak transcription | Small Intestine | intestine |
| 26 | chr6:128639200-128644800 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
| 27 | chr6:128639400-128648800 | Weak transcription | HUVEC | blood vessel |
| 28 | chr6:128639800-128659000 | Weak transcription | Fetal Stomach | stomach |
| 29 | chr6:128640000-128653200 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
| 30 | chr6:128640000-128660600 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
| 31 | chr6:128640200-128645200 | Enhancers | Brain Hippocampus Middle | brain |
| 32 | chr6:128640400-128642200 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
| 33 | chr6:128640600-128649000 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
| 34 | chr6:128640600-128649000 | Weak transcription | Primary T cells from cord blood | blood |
| 35 | chr6:128641000-128642200 | Enhancers | Fetal Heart | heart |
| 36 | chr6:128641000-128643400 | Strong transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 37 | chr6:128641200-128643600 | Strong transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 38 | chr6:128641200-128645400 | Enhancers | Brain Substantia Nigra | brain |
| 39 | chr6:128641400-128642200 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
| 40 | chr6:128641400-128644000 | Weak transcription | HMEC | breast |
| 41 | chr6:128641400-128649000 | Weak transcription | Fetal Lung | lung |
| 42 | chr6:128641400-128661400 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 43 | chr6:128641600-128643000 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
| 44 | chr6:128641600-128645400 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 45 | chr6:128641800-128642200 | Enhancers | Brain Dorsolateral Prefrontal Cortex | brain |
| 46 | chr6:128641800-128643200 | Strong transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 47 | chr6:128641800-128644000 | Weak transcription | Brain Anterior Caudate | brain |
| 48 | chr6:128641800-128645000 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
| 49 | chr6:128641800-128657600 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
| 50 | chr6:128642000-128644000 | Weak transcription | Brain Angular Gyrus | brain |
