Variant report

Variant	rs1538527
Chromosome Location	chr1:216895167-216895168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10157018	1.00[AMR][1000 genomes]
rs11572572	1.00[AMR][1000 genomes]
rs1339339	0.87[YRI][hapmap];0.84[AFR][1000 genomes]
rs1339351	1.00[AMR][1000 genomes]
rs1339353	1.00[AMR][1000 genomes]
rs1572741	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1857409	1.00[AMR][1000 genomes]
rs2065805	1.00[AMR][1000 genomes]
rs2153238	1.00[AMR][1000 genomes]
rs2789714	0.88[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2789715	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2789724	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs2813701	1.00[AMR][1000 genomes]
rs2813709	1.00[AMR][1000 genomes]
rs2813710	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2820880	1.00[AMR][1000 genomes]
rs946462	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs946463	1.00[AMR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216884600-216895200	Weak transcription	Psoas Muscle	Psoas
2	chr1:216887400-216896400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:216891600-216897400	Active TSS	Right Atrium	heart
4	chr1:216893000-216896600	Active TSS	Fetal Stomach	stomach
5	chr1:216893600-216896600	Active TSS	Right Ventricle	heart
6	chr1:216893800-216897800	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr1:216894000-216897400	Active TSS	Left Ventricle	heart
8	chr1:216894000-216897800	Active TSS	Placenta	Placenta
9	chr1:216894200-216897600	Active TSS	Fetal Heart	heart
10	chr1:216894400-216895200	Bivalent Enhancer	Fetal Lung	lung
11	chr1:216894600-216895200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:216894600-216895200	Enhancers	Duodenum Mucosa	Duodenum
13	chr1:216894600-216895800	Bivalent Enhancer	Fetal Brain Male	brain
14	chr1:216894600-216897600	Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr1:216894800-216896000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr1:216894800-216897400	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr1:216895000-216895400	Flanking Active TSS	Fetal Intestine Small	intestine
18	chr1:216895000-216896000	Active TSS	Brain Germinal Matrix	brain
19	chr1:216895000-216897400	Active TSS	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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