Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1015244	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10157448	0.97[EUR][1000 genomes]
rs10159003	0.97[EUR][1000 genomes]
rs10494995	0.91[EUR][1000 genomes]
rs11580781	0.94[EUR][1000 genomes]
rs11582180	0.94[EUR][1000 genomes]
rs12121815	0.84[ASN][1000 genomes]
rs1339408	0.91[EUR][1000 genomes]
rs1339409	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1538546	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17024410	0.97[EUR][1000 genomes]
rs4284239	0.97[EUR][1000 genomes]
rs4433363	0.84[ASN][1000 genomes]
rs61818347	0.89[ASN][1000 genomes]
rs61818348	0.89[ASN][1000 genomes]
rs61818351	0.89[ASN][1000 genomes]
rs61818356	0.87[EUR][1000 genomes]
rs6678565	0.94[EUR][1000 genomes]
rs7526079	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7530450	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
2	nsv873170	chr1:215367248-215440975	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215366800-215370200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:215366800-215371200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:215367000-215374400	Weak transcription	Osteobl	bone
4	chr1:215367400-215370800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:215369200-215370200	Strong transcription	NHDF-Ad	bronchial

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