Variant report

Variant	rs1538546
Chromosome Location	chr1:215370762-215370763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215370070..215372970-chr1:215440375..215442931,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1015244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10157448	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10159003	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10458471	1.00[CEU][hapmap]
rs10494995	0.91[EUR][1000 genomes]
rs11580781	0.94[EUR][1000 genomes]
rs11582180	0.94[EUR][1000 genomes]
rs12061587	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs12069528	1.00[CHB][hapmap]
rs12069967	1.00[CHB][hapmap]
rs12121815	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1339408	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1339409	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1538545	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17024410	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1947364	1.00[CHB][hapmap]
rs2363553	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2802656	0.82[JPT][hapmap]
rs4284239	0.97[EUR][1000 genomes]
rs4433363	1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs4573492	1.00[CHB][hapmap]
rs61818347	0.89[ASN][1000 genomes]
rs61818348	0.89[ASN][1000 genomes]
rs61818351	0.89[ASN][1000 genomes]
rs61818356	0.87[EUR][1000 genomes]
rs6665177	1.00[CHB][hapmap]
rs6678565	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7526079	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7530450	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7535436	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7551562	1.00[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
2	nsv873170	chr1:215367248-215440975	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	esv2760086	chr1:215370570-215381265	Enhancers Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215366800-215371200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:215367000-215374400	Weak transcription	Osteobl	bone
3	chr1:215367400-215370800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:215370200-215371200	Weak transcription	NHDF-Ad	bronchial
5	chr1:215370600-215370800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:215370600-215374200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links