Variant report

Variant	rs1538792
Chromosome Location	chr6:102324137-102324138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12333116	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12333203	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12333317	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1543778	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17062456	0.85[ASN][1000 genomes]
rs17062569	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2000937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2250050	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2251865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2518199	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2518204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2791825	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2791828	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2791829	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2791830	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2791831	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2791835	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2791836	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2791846	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs34747916	1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs56000471	0.85[ASN][1000 genomes]
rs56230248	0.85[ASN][1000 genomes]
rs57847212	0.85[ASN][1000 genomes]
rs60199869	0.92[ASN][1000 genomes]
rs6924758	0.85[ASN][1000 genomes]
rs73512746	0.92[ASN][1000 genomes]
rs73512772	0.92[ASN][1000 genomes]
rs73512776	0.92[ASN][1000 genomes]
rs73512781	0.92[ASN][1000 genomes]
rs73761411	0.85[ASN][1000 genomes]
rs73761412	0.85[ASN][1000 genomes]
rs73761417	0.85[ASN][1000 genomes]
rs7739324	0.85[ASN][1000 genomes]
rs7754697	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7760050	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9498692	0.85[ASN][1000 genomes]
rs9498712	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9498714	0.92[ASN][1000 genomes]
rs9498715	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9498719	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9498721	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9498722	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9498725	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv463994	chr6:102303080-102346746	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv604318	chr6:102303080-102346746	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv604319	chr6:102307069-102355867	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv604320	chr6:102310726-102350747	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv886465	chr6:102318339-102466397	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2462735	chr6:102323909-102324361	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102323800-102324800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:102323800-102325200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links