Variant report

Variant	rs1539585
Chromosome Location	chr6:28679944-28679945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28677418..28680355-chr6:28735511..28738375,2	K562	blood:
2	chr6:28676549..28680840-chr6:28724202..28726516,6	K562	blood:
3	chr6:28677880..28679993-chr6:28950394..28952978,2	K562	blood:
4	chr6:28677024..28680294-chr6:28708371..28711108,3	K562	blood:
5	chr6:28676549..28680032-chr6:28724574..28727425,3	K562	blood:
6	chr6:28678329..28679999-chr6:28949047..28951282,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10456364	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10456365	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1233572	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1233575	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1233576	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1233577	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1233584	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1233586	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1233596	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1233601	0.84[EUR][1000 genomes]
rs1233607	0.83[EUR][1000 genomes]
rs1233615	0.84[EUR][1000 genomes]
rs1233616	0.84[EUR][1000 genomes]
rs1233617	0.83[EUR][1000 genomes]
rs1235176	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1742742	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2394152	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713178	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7772289	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9257134	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9257135	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9348813	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9366725	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9391676	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9404960	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	esv3449735	chr6:28679873-28681871	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28677800-28680000	Weak transcription	HMEC	breast
2	chr6:28679000-28680000	Weak transcription	A549	lung
3	chr6:28679400-28680200	Enhancers	K562	blood
4	chr6:28679600-28680000	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links