Variant report
| Variant | rs154095 |
|---|---|
| Chromosome Location | chr5:151495545-151495546 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000177556 | Chromatin interaction |
| ENSG00000145907 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs153531 | 0.84[AFR][1000 genomes] |
| rs256141 | 0.84[AFR][1000 genomes] |
| rs256142 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs256145 | 0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs256147 | 0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs256148 | 0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs256149 | 0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs256150 | 0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs256156 | 0.88[ASN][1000 genomes] |
| rs294961 | 0.86[CHB][hapmap];0.84[GIH][hapmap] |
| rs29824 | 0.87[ASN][1000 genomes] |
| rs29826 | 0.85[ASN][1000 genomes] |
| rs29831 | 0.86[ASN][1000 genomes] |
| rs29833 | 0.86[ASN][1000 genomes] |
| rs29836 | 0.87[ASN][1000 genomes] |
| rs29837 | 0.87[ASN][1000 genomes] |
| rs29842 | 0.90[ASN][1000 genomes] |
| rs29843 | 0.90[ASN][1000 genomes] |
| rs29845 | 0.83[AFR][1000 genomes] |
| rs365773 | 0.82[AFR][1000 genomes] |
| rs390073 | 0.87[ASN][1000 genomes] |
| rs39804 | 0.85[ASN][1000 genomes] |
| rs787118 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1020899 | chr5:151412785-151516788 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv2760935 | chr5:151463117-151586051 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv883039 | chr5:151471642-151540888 | Enhancers Weak transcription Bivalent Enhancer Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv883040 | chr5:151471642-151596273 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv5072 | chr5:151490271-151530419 | Enhancers Weak transcription Active TSS Bivalent Enhancer | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs154095 | G3BP1 | cis | cerebellum | SCAN |
| rs154095 | ZNF300 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
