Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs153537	0.84[EUR][1000 genomes]
rs153538	0.84[EUR][1000 genomes]
rs154099	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs154106	0.83[EUR][1000 genomes]
rs154107	0.84[EUR][1000 genomes]
rs154695	0.85[EUR][1000 genomes]
rs154696	0.85[EUR][1000 genomes]
rs154700	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs154702	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159494	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159583	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs159589	0.85[EUR][1000 genomes]
rs169953	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1896778	0.84[EUR][1000 genomes]
rs253725	0.84[EUR][1000 genomes]
rs253727	0.84[EUR][1000 genomes]
rs253728	0.82[EUR][1000 genomes]
rs253729	0.84[EUR][1000 genomes]
rs253730	0.84[EUR][1000 genomes]
rs2584910	0.84[EUR][1000 genomes]
rs29846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29847	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29850	0.85[EUR][1000 genomes]
rs29853	0.85[EUR][1000 genomes]
rs388795	0.84[EUR][1000 genomes]
rs39580	0.85[EUR][1000 genomes]
rs42390	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs43166	0.85[EUR][1000 genomes]
rs518297	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020899	chr5:151412785-151516788	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv5071	chr5:151438330-151472013	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv508384	chr5:151438582-151487326	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151432600-151450000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:151446800-151451600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:151446800-151452000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:151447000-151451600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:151447000-151452000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:151447000-151452000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:151447400-151451600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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