Variant report

Variant	rs154106
Chromosome Location	chr5:151481045-151481046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs153537	0.91[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs153538	0.98[EUR][1000 genomes]
rs154097	0.83[EUR][1000 genomes]
rs154099	0.83[EUR][1000 genomes]
rs154107	0.97[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs154695	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs154696	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs154700	0.83[EUR][1000 genomes]
rs154702	0.83[EUR][1000 genomes]
rs159494	0.83[EUR][1000 genomes]
rs159583	0.83[EUR][1000 genomes]
rs159589	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs169953	0.83[EUR][1000 genomes]
rs1896778	0.98[EUR][1000 genomes]
rs253725	0.97[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs253727	0.98[EUR][1000 genomes]
rs253728	0.96[EUR][1000 genomes]
rs253729	0.97[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs253730	0.98[EUR][1000 genomes]
rs2584910	0.97[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs29822	0.82[ASN][1000 genomes]
rs29823	0.82[ASN][1000 genomes]
rs29825	0.82[ASN][1000 genomes]
rs29827	0.80[ASN][1000 genomes]
rs29835	0.82[ASN][1000 genomes]
rs29838	0.82[ASN][1000 genomes]
rs29846	0.83[EUR][1000 genomes]
rs29847	0.83[EUR][1000 genomes]
rs29850	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs29853	0.97[EUR][1000 genomes]
rs388795	0.98[EUR][1000 genomes]
rs39580	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs39802	0.82[ASN][1000 genomes]
rs39803	0.82[ASN][1000 genomes]
rs40812	0.86[ASN][1000 genomes]
rs410723	0.86[ASN][1000 genomes]
rs42390	0.83[EUR][1000 genomes]
rs43166	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs518297	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020899	chr5:151412785-151516788	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv508384	chr5:151438582-151487326	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760935	chr5:151463117-151586051	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv883039	chr5:151471642-151540888	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv883040	chr5:151471642-151596273	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151480800-151486200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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