The 2.0 version of rSNPBase

Variant report

Variant rs1541098
Chromosome Location chr1:94667970-94667971
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94634200-94675200 Weak transcription Rectal Smooth Muscle rectum
2 chr1:94636200-94673400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
3 chr1:94638400-94669200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
4 chr1:94640000-94684800 Weak transcription Spleen Spleen
5 chr1:94642400-94684600 Weak transcription Fetal Stomach stomach
6 chr1:94643400-94668800 Weak transcription Stomach Mucosa stomach
7 chr1:94644800-94670000 Weak transcription Stomach Smooth Muscle stomach
8 chr1:94644800-94684400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr1:94645000-94687600 Weak transcription Pancreas Pancrea
10 chr1:94647200-94669200 Weak transcription Fetal Adrenal Gland Adrenal Gland
11 chr1:94647200-94675800 Weak transcription Cortex derived primary cultured neurospheres brain
12 chr1:94647400-94669200 Weak transcription Placenta Amnion Placenta Amnion
13 chr1:94647800-94668000 Weak transcription iPS-20b Cell Line embryonic stem cell
14 chr1:94647800-94676200 Weak transcription Small Intestine intestine
15 chr1:94649400-94684000 Weak transcription Right Ventricle heart
16 chr1:94649600-94680000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr1:94653600-94668200 Weak transcription Placenta Placenta
18 chr1:94657000-94672000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
19 chr1:94660400-94681000 Weak transcription Fetal Heart heart
20 chr1:94662000-94670400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr1:94663200-94672400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr1:94663200-94673000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr1:94663200-94674600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr1:94663800-94672200 Strong transcription NH-A brain
25 chr1:94664800-94671000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
26 chr1:94664800-94672400 Strong transcription Adipose Nuclei Adipose
27 chr1:94664800-94672800 Strong transcription HSMM muscle
28 chr1:94665000-94668000 Strong transcription Liver Liver
29 chr1:94665200-94668400 Strong transcription Fetal Kidney kidney
30 chr1:94665200-94670400 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
31 chr1:94665200-94670400 Strong transcription HepG2 liver
32 chr1:94665400-94673400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
33 chr1:94665600-94671800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
34 chr1:94666000-94669400 Strong transcription HUVEC blood vessel
35 chr1:94666000-94670400 Strong transcription Skeletal Muscle Male skeletal muscle
36 chr1:94666200-94672200 Strong transcription Skeletal Muscle Female skeletal muscle
37 chr1:94666600-94670000 Strong transcription Fetal Muscle Trunk muscle
38 chr1:94666600-94674600 Strong transcription NHDF-Ad bronchial
39 chr1:94666800-94670800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr1:94666800-94671200 Strong transcription Muscle Satellite Cultured Cells --
41 chr1:94666800-94671400 Strong transcription Osteobl bone
42 chr1:94667000-94668400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
43 chr1:94667000-94670000 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr1:94667000-94670000 Strong transcription Left Ventricle heart
45 chr1:94667000-94670400 Strong transcription Fetal Muscle Leg muscle
46 chr1:94667000-94670800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr1:94667200-94668600 Strong transcription A549 lung
48 chr1:94667600-94668400 Strong transcription HUES64 Cell Line embryonic stem cell
49 chr1:94667600-94668800 Genic enhancers Breast Myoepithelial Primary Cells Breast
50 chr1:94667600-94669200 Strong transcription Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015