Variant report

Variant	rs1541437
Chromosome Location	chr7:101584634-101584635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:27)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:101524980..101528234-chr7:101584443..101587218,5	MCF-7	breast:
2	chr7:101370298..101373054-chr7:101584171..101586451,2	MCF-7	breast:
3	chr7:101574113..101579725-chr7:101580632..101589310,14	MCF-7	breast:
4	chr7:101455300..101463809-chr7:101582792..101593292,40	MCF-7	breast:
5	chr7:101524538..101530208-chr7:101583819..101590225,13	MCF-7	breast:
6	chr7:101584102..101588182-chr7:101600791..101605094,5	MCF-7	breast:
7	chr7:101552221..101555096-chr7:101584153..101586254,2	MCF-7	breast:
8	chr7:101584411..101586887-chr7:101593987..101597254,4	MCF-7	breast:
9	chr7:101514433..101518580-chr7:101582721..101585796,4	MCF-7	breast:
10	chr7:101583393..101585802-chr7:101586668..101590490,4	MCF-7	breast:
11	chr7:101580274..101583226-chr7:101583511..101585560,4	MCF-7	breast:
12	chr7:101583066..101585594-chr7:101646947..101648936,2	MCF-7	breast:
13	chr7:101582848..101590446-chr7:101646237..101653992,20	MCF-7	breast:
14	chr7:101520471..101523055-chr7:101583923..101585859,2	MCF-7	breast:
15	chr7:101574397..101581279-chr7:101584061..101589887,8	K562	blood:
16	chr7:101583272..101586097-chr7:101589522..101591483,2	K562	blood:
17	chr7:101582943..101584775-chr7:101877100..101879982,2	MCF-7	breast:
18	chr7:101582536..101585354-chr7:101767160..101769888,2	MCF-7	breast:
19	chr7:101584398..101586117-chr7:101590854..101593912,3	MCF-7	breast:
20	chr7:101582741..101590045-chr7:101612112..101621417,29	MCF-7	breast:
21	chr7:101584190..101586306-chr7:101823871..101825627,2	MCF-7	breast:
22	chr7:101511680..101514939-chr7:101582566..101587455,5	MCF-7	breast:
23	chr7:101457338..101463673-chr7:101582596..101588609,15	MCF-7	breast:
24	chr7:101575829..101577799-chr7:101583954..101585899,2	K562	blood:
25	chr7:101530702..101533237-chr7:101584032..101585932,2	MCF-7	breast:
26	chr7:101583996..101590317-chr7:101598825..101610404,14	MCF-7	breast:
27	chr7:101583175..101586097-chr7:101587882..101593351,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction
ENSG00000272219	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10225148	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7785266	0.89[YRI][hapmap]
rs7796818	0.83[YRI][hapmap]
rs7810922	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv482846	chr7:101539981-101707666	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv888827	chr7:101562674-101650302	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101567000-101596000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr7:101570200-101597000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:101571600-101587400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr7:101575800-101587400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr7:101577600-101595600	Weak transcription	Primary T cells from cord blood	blood
6	chr7:101578200-101612000	Weak transcription	HepG2	liver
7	chr7:101578200-101671200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr7:101579400-101586000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr7:101580400-101585200	Weak transcription	HUVEC	blood vessel
10	chr7:101580400-101585600	Weak transcription	Small Intestine	intestine
11	chr7:101580400-101587600	Weak transcription	Spleen	Spleen
12	chr7:101580600-101584800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr7:101580600-101584800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr7:101580600-101584800	Weak transcription	NHLF	lung
15	chr7:101580600-101585000	Weak transcription	HSMM	muscle
16	chr7:101580600-101585800	Weak transcription	Lung	lung
17	chr7:101580600-101586000	Weak transcription	Brain Hippocampus Middle	brain
18	chr7:101580600-101590600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr7:101580600-101590800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr7:101580600-101591200	Weak transcription	Brain Substantia Nigra	brain
21	chr7:101580800-101585000	Weak transcription	Adipose Nuclei	Adipose
22	chr7:101582400-101585600	Enhancers	Dnd41	blood
23	chr7:101582800-101586000	Weak transcription	Right Ventricle	heart
24	chr7:101583400-101586200	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr7:101583400-101587600	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr7:101583400-101587800	Enhancers	Fetal Thymus	thymus
27	chr7:101583400-101608000	Weak transcription	Primary B cells from cord blood	blood
28	chr7:101583600-101584800	Enhancers	Psoas Muscle	Psoas
29	chr7:101583600-101585000	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr7:101583600-101585200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr7:101583600-101585600	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr7:101583600-101585600	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr7:101583600-101585800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr7:101583600-101585800	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr7:101583600-101586200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr7:101583600-101586200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr7:101583600-101586200	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr7:101583600-101586400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr7:101583600-101586400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr7:101583600-101587400	Enhancers	Fetal Stomach	stomach
41	chr7:101583600-101587800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr7:101583600-101589400	Enhancers	H1 Cell Line	embryonic stem cell
43	chr7:101583600-101589600	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr7:101583600-101591000	Enhancers	Fetal Heart	heart
45	chr7:101583800-101584800	Enhancers	Rectal Smooth Muscle	rectum
46	chr7:101583800-101585600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr7:101583800-101585600	Enhancers	Fetal Lung	lung
48	chr7:101583800-101585800	Enhancers	H9 Cell Line	embryonic stem cell
49	chr7:101583800-101586400	Enhancers	Placenta Amnion	Placenta Amnion
50	chr7:101584000-101585000	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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