Variant report

Variant	rs1544119
Chromosome Location	chr1:155914240-155914241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1010033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1018730	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1055184	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1094558	0.81[ASN][1000 genomes]
rs12039053	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12129384	0.81[AFR][1000 genomes]
rs12138833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12747344	1.00[CEU][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs1749409	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1765275	0.85[CEU][hapmap]
rs1964951	0.80[EUR][1000 genomes]
rs2275071	0.95[ASN][1000 genomes]
rs2275079	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2275081	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2364402	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2364404	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28379575	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2886069	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34802187	0.80[EUR][1000 genomes]
rs35588936	0.89[CEU][hapmap];0.94[TSI][hapmap]
rs35730001	0.80[EUR][1000 genomes]
rs3738587	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3768280	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4412586	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4661160	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4661162	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4661170	0.80[EUR][1000 genomes]
rs4661172	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs493446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs506688	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs527113	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs536870	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs572609	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs605025	1.00[CEU][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap]
rs6660802	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6667096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs708614	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs822502	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs822503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[ASN][1000 genomes]
rs822519	1.00[CEU][hapmap]
rs822653	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155905000-155914600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:155905000-155914600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:155905000-155915200	Weak transcription	Fetal Brain Female	brain
4	chr1:155905000-155915800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:155905000-155915800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr1:155905000-155916000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr1:155905000-155916200	Weak transcription	Colon Smooth Muscle	Colon
8	chr1:155905000-155945600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr1:155905200-155914600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:155905400-155915800	Weak transcription	Thymus	Thymus
11	chr1:155905400-155918400	Weak transcription	Psoas Muscle	Psoas
12	chr1:155908000-155915800	Enhancers	Primary B cells from cord blood	blood
13	chr1:155908000-155915800	Enhancers	Primary B cells from peripheral blood	blood
14	chr1:155908200-155914800	Enhancers	Fetal Muscle Leg	muscle
15	chr1:155908800-155916000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:155909400-155914600	Enhancers	GM12878-XiMat	blood
17	chr1:155909400-155916000	Enhancers	Adipose Nuclei	Adipose
18	chr1:155909600-155916200	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr1:155909600-155916400	Enhancers	Primary T cells fromperipheralblood	blood
20	chr1:155909800-155916000	Enhancers	Fetal Intestine Large	intestine
21	chr1:155909800-155916200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr1:155910000-155915400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr1:155910600-155916000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr1:155910600-155917200	Weak transcription	Aorta	Aorta
25	chr1:155910800-155916000	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr1:155911000-155915200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:155911200-155940000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr1:155911400-155914400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr1:155911400-155914400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr1:155911400-155914400	Weak transcription	NHLF	lung
31	chr1:155911400-155914600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr1:155911400-155914600	Enhancers	A549	lung
33	chr1:155911400-155915800	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr1:155911400-155916000	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr1:155911600-155914400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr1:155911600-155914400	Weak transcription	Brain Angular Gyrus	brain
37	chr1:155911600-155914600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr1:155911600-155914600	Weak transcription	Primary T cells from cord blood	blood
39	chr1:155911600-155914600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr1:155911600-155914600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr1:155911600-155914600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr1:155911600-155914800	Weak transcription	Fetal Stomach	stomach
43	chr1:155911600-155915800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr1:155911600-155915800	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr1:155911600-155915800	Weak transcription	Osteobl	bone
46	chr1:155911600-155916200	Weak transcription	K562	blood
47	chr1:155911600-155916200	Weak transcription	NHDF-Ad	bronchial
48	chr1:155911800-155914600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr1:155911800-155914600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr1:155911800-155915000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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