Variant report

Variant	rs154683
Chromosome Location	chr5:151416746-151416747
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs150566	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs153528	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs159805	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs159806	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs159807	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs159810	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs159813	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs159931	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs159933	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs255486	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs29657	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs29667	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs302389	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs39786	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs707165	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020223	chr5:151383539-151417923	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1020899	chr5:151412785-151516788	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151416000-151417800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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