The 2.0 version of rSNPBase

Variant report

Variant rs1548804
Chromosome Location chr12:11001406-11001407
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:10973600-11009600 Weak transcription HSMM muscle
2 chr12:10988400-11006000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr12:10988400-11008400 Weak transcription Rectal Mucosa Donor 29 rectum
4 chr12:10988800-11001600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr12:10989200-11008600 Weak transcription Brain Cingulate Gyrus brain
6 chr12:10989400-11008200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
7 chr12:10990000-11003800 Weak transcription Right Ventricle heart
8 chr12:10990000-11004000 Weak transcription Fetal Heart heart
9 chr12:10990000-11005400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
10 chr12:10990000-11005400 Weak transcription Psoas Muscle Psoas
11 chr12:10990000-11008400 Weak transcription Fetal Lung lung
12 chr12:10990200-11008400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
13 chr12:10991200-11007800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr12:10991200-11008000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr12:10991400-11010800 Weak transcription Rectal Smooth Muscle rectum
16 chr12:10991600-11002000 Weak transcription Primary T killer naive cells fromperipheralblood blood
17 chr12:10993200-11008000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr12:10993600-11007600 Weak transcription Fetal Intestine Small intestine
19 chr12:10993800-11008600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr12:10994000-11003800 Weak transcription Primary B cells from cord blood blood
21 chr12:10994000-11003800 Weak transcription Primary hematopoietic stem cells short term culture blood
22 chr12:10994000-11007800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
23 chr12:10994000-11008000 Weak transcription Brain Germinal Matrix brain
24 chr12:10994000-11008200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr12:10994000-11008400 Weak transcription Brain Substantia Nigra brain
26 chr12:10994000-11008400 Weak transcription Duodenum Mucosa Duodenum
27 chr12:10994200-11002200 Weak transcription Primary T helper cells fromperipheralblood blood
28 chr12:10994200-11006000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
29 chr12:10994200-11008400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr12:10994200-11008400 Weak transcription Thymus Thymus
31 chr12:10994200-11008400 Weak transcription HepG2 liver
32 chr12:10994200-11008600 Weak transcription Spleen Spleen
33 chr12:10994400-11001600 Weak transcription Placenta Placenta
34 chr12:10994400-11008400 Weak transcription Rectal Mucosa Donor 31 rectum
35 chr12:10994400-11035000 Weak transcription Fetal Kidney kidney
36 chr12:10994800-11008400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
37 chr12:10995600-11010800 Weak transcription Skeletal Muscle Female skeletal muscle
38 chr12:10995800-11005400 Weak transcription GM12878-XiMat blood
39 chr12:10995800-11005800 Weak transcription Lung lung
40 chr12:10995800-11008400 Weak transcription Brain Hippocampus Middle brain
41 chr12:10996000-11003800 Weak transcription Primary hematopoietic stem cells blood
42 chr12:10996800-11001800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
43 chr12:10997600-11008200 Weak transcription ES-I3 Cell Line embryonic stem cell
44 chr12:10997800-11006200 Weak transcription Small Intestine intestine
45 chr12:10997800-11007400 Weak transcription HUES64 Cell Line embryonic stem cell
46 chr12:10998000-11004200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
47 chr12:10998000-11008200 Weak transcription Primary B cells from peripheral blood blood
48 chr12:10998200-11007600 Weak transcription Fetal Brain Female brain
49 chr12:10998200-11008600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
50 chr12:10998600-11008400 Weak transcription Primary T regulatory cells fromperipheralblood blood

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Last update: Aug 31, 2015