Variant report

Variant	rs1550065
Chromosome Location	chr15:79247100-79247101
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1550066	1.00[EUR][1000 genomes]
rs16970350	1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs1808757	0.87[ASN][1000 genomes]
rs1865503	0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2869815	0.87[ASN][1000 genomes]
rs3825930	0.84[ASN][1000 genomes]
rs4778725	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4778730	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs4779147	1.00[EUR][1000 genomes]
rs4779161	0.95[ASN][1000 genomes]
rs59238093	0.85[ASN][1000 genomes]
rs61504829	0.85[ASN][1000 genomes]
rs7178725	1.00[EUR][1000 genomes]
rs73472313	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904433	chr15:79243571-79310288	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79238600-79252600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:79244000-79263400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr15:79244000-79288000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:79244200-79249000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:79244200-79253400	Weak transcription	Brain Angular Gyrus	brain
6	chr15:79244400-79247600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:79244600-79249000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:79244600-79249000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr15:79244600-79249200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:79244800-79249800	Weak transcription	Right Atrium	heart
11	chr15:79245600-79252800	Weak transcription	Pancreas	Pancrea
12	chr15:79247000-79247200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:79247000-79247400	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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