Variant report

Variant	rs1550066
Chromosome Location	chr15:79241184-79241185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:79223545..79225984-chr15:79241136..79243673,2	MCF-7	breast:
2	chr15:79236829..79239228-chr15:79240562..79242151,2	K562	blood:

Variant related genes	Relation type
ENSG00000103811	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12442870	0.82[AFR][1000 genomes]
rs1550065	1.00[EUR][1000 genomes]
rs1865503	1.00[EUR][1000 genomes]
rs4778725	1.00[EUR][1000 genomes]
rs4779147	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7178725	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79237800-79241800	Weak transcription	Fetal Intestine Large	intestine
2	chr15:79237800-79242200	Weak transcription	Esophagus	oesophagus
3	chr15:79237800-79242200	Weak transcription	Fetal Kidney	kidney
4	chr15:79237800-79242400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr15:79237800-79242600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:79237800-79243600	Weak transcription	Right Atrium	heart
7	chr15:79237800-79243600	Weak transcription	Spleen	Spleen
8	chr15:79237800-79244200	Weak transcription	Psoas Muscle	Psoas
9	chr15:79238000-79242000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:79238000-79242000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr15:79238000-79242200	Weak transcription	Lung	lung
12	chr15:79238000-79242400	Weak transcription	Adipose Nuclei	Adipose
13	chr15:79238000-79243200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr15:79238000-79243400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:79238400-79241600	Weak transcription	Gastric	stomach
16	chr15:79238400-79241800	Weak transcription	Fetal Intestine Small	intestine
17	chr15:79238600-79241800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:79238600-79244200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:79238600-79252600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:79238800-79241600	Weak transcription	Pancreas	Pancrea
21	chr15:79239000-79243600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr15:79239800-79243200	Enhancers	HepG2	liver
23	chr15:79240800-79245400	Enhancers	Stomach Mucosa	stomach
24	chr15:79241000-79245200	Enhancers	Liver	Liver

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