Variant report

Variant	rs1551654
Chromosome Location	chr8:34182206-34182207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1014494	0.82[ASN][1000 genomes]
rs1014495	0.82[ASN][1000 genomes]
rs13274419	0.82[ASN][1000 genomes]
rs16881977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2168962	0.81[EUR][1000 genomes]
rs2590454	0.82[ASN][1000 genomes]
rs2590461	0.89[ASN][1000 genomes]
rs2590462	0.89[ASN][1000 genomes]
rs2590465	0.89[ASN][1000 genomes]
rs2590466	0.89[ASN][1000 genomes]
rs2590467	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2590468	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2590476	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2590479	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609600	0.89[ASN][1000 genomes]
rs2609603	0.82[ASN][1000 genomes]
rs2609610	0.82[ASN][1000 genomes]
rs2609614	0.82[ASN][1000 genomes]
rs2609617	0.82[ASN][1000 genomes]
rs2609618	0.82[ASN][1000 genomes]
rs2609620	0.84[EUR][1000 genomes]
rs2609627	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609649	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609650	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2609651	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609654	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2719277	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719278	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719288	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719299	0.89[ASN][1000 genomes]
rs2719300	0.89[ASN][1000 genomes]
rs2719305	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719310	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719311	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719312	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719315	0.82[ASN][1000 genomes]
rs2719316	0.82[ASN][1000 genomes]
rs2719329	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28404543	0.82[EUR][1000 genomes]
rs2953927	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2953928	0.96[ASN][1000 genomes]
rs2953930	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2953931	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2953932	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2953934	0.81[EUR][1000 genomes]
rs2953935	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2959322	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959323	0.84[EUR][1000 genomes]
rs2978835	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2978837	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4327859	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4739544	0.81[AFR][1000 genomes]
rs6987252	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6988455	0.82[ASN][1000 genomes]
rs978438	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs978439	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs981752	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610931	chr8:34176474-34226215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34181200-34184400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr8:34181800-34182600	Enhancers	H1 Cell Line	embryonic stem cell
3	chr8:34181800-34184800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:34181800-34185400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:34182000-34182400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:34182000-34184800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:34182000-34185600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr8:34182200-34182400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr8:34182200-34182800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:34182200-34183800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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