Variant report

Variant	rs1551744
Chromosome Location	chr11:46865000-46865001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:46864934-46865037	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46863476..46865303-chr11:46874435..46876525,2	K562	blood:
2	chr11:46849432..46851635-chr11:46862564..46865490,2	K562	blood:

Variant related genes	Relation type
LRP4-AS1	TF binding region

Extended variants
information (count: 103 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs1007738	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10734548	0.88[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.91[YRI][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10734549	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10742784	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769205	0.89[GIH][hapmap]
rs10769208	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10769211	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10769212	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10769226	0.83[GIH][hapmap];0.89[TSI][hapmap]
rs10838612	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs10838620	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10838624	0.94[ASN][1000 genomes]
rs10838627	0.87[ASN][1000 genomes]
rs10838628	0.87[ASN][1000 genomes]
rs10838629	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10838635	0.83[GIH][hapmap];0.89[TSI][hapmap]
rs10838644	0.83[GIH][hapmap];0.89[TSI][hapmap]
rs11038977	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap]
rs11038994	0.94[ASN][1000 genomes]
rs11038999	0.96[ASN][1000 genomes]
rs11039002	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs11039014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.96[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11039017	0.87[ASN][1000 genomes]
rs11039018	0.81[ASN][1000 genomes]
rs11600292	0.82[GIH][hapmap];0.88[TSI][hapmap]
rs11602036	0.89[ASN][1000 genomes]
rs12361673	0.89[GIH][hapmap]
rs12575609	0.92[ASN][1000 genomes]
rs12806577	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12807111	0.88[EUR][1000 genomes]
rs13448	0.86[GIH][hapmap]
rs1809293	0.94[ASN][1000 genomes]
rs2035068	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2070850	0.87[CHB][hapmap]
rs2070852	0.89[GIH][hapmap];0.92[MEX][hapmap]
rs2290883	0.94[ASN][1000 genomes]
rs2290884	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2306026	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2306027	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2306028	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs2306033	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs2306035	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2306036	0.82[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.81[ASN][1000 genomes]
rs2306037	0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs3136441	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs3136447	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs3136457	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs3136460	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs3816614	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3829940	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4075619	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4076557	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap]
rs4294527	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4394802	0.83[GIH][hapmap];0.85[JPT][hapmap];0.89[TSI][hapmap]
rs4453193	0.89[ASN][1000 genomes]
rs4453194	0.85[ASN][1000 genomes]
rs4469848	0.94[ASN][1000 genomes]
rs4534535	0.89[ASN][1000 genomes]
rs4548577	0.81[JPT][hapmap]
rs4581406	0.83[GIH][hapmap];0.89[TSI][hapmap]
rs4606447	0.87[GIH][hapmap]
rs4752815	0.83[GIH][hapmap];0.89[TSI][hapmap]
rs4752816	0.83[GIH][hapmap];0.89[TSI][hapmap]
rs4752927	0.86[JPT][hapmap]
rs4752932	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs4752933	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs4752936	0.94[ASN][1000 genomes]
rs4752940	0.99[ASN][1000 genomes]
rs4752941	0.96[ASN][1000 genomes]
rs4752946	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.94[ASN][1000 genomes]
rs4752947	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs5896	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap]
rs60258676	0.94[ASN][1000 genomes]
rs6485692	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6485695	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6485696	0.94[GIH][hapmap];0.80[MEX][hapmap]
rs6485702	0.91[GIH][hapmap];0.80[MEX][hapmap]
rs6485715	0.83[GIH][hapmap];0.89[TSI][hapmap]
rs7101374	0.89[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.93[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7107778	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109707	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7118170	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7119247	0.86[ASN][1000 genomes]
rs7124648	0.83[GIH][hapmap];0.89[TSI][hapmap]
rs7126005	0.83[GIH][hapmap];0.89[TSI][hapmap]
rs7128650	0.83[GIH][hapmap];0.89[TSI][hapmap]
rs7130947	0.83[GIH][hapmap];0.89[TSI][hapmap]
rs7480140	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7480260	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7929294	0.83[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.96[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7934421	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7935346	0.85[GIH][hapmap];0.89[TSI][hapmap]
rs7938169	0.83[GIH][hapmap];0.89[TSI][hapmap]
rs7940441	0.92[GIH][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs7940578	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7940682	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7941252	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7941894	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7941964	0.90[ASN][1000 genomes]
rs7943866	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7945558	0.89[TSI][hapmap]
rs898604	0.81[ASN][1000 genomes]
rs964551	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1551744	ACP2	cis	lymphoblastoid	seeQTL

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46848400-46866200	Weak transcription	Placenta	Placenta
2	chr11:46848800-46865800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr11:46849000-46865200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr11:46849000-46865200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:46849000-46865800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr11:46849000-46865800	Weak transcription	Thymus	Thymus
7	chr11:46849000-46866200	Weak transcription	Primary B cells from cord blood	blood
8	chr11:46849000-46866200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr11:46849000-46867000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:46849200-46866000	Weak transcription	NH-A	brain
11	chr11:46849200-46866200	Weak transcription	Brain Germinal Matrix	brain
12	chr11:46849200-46866600	Weak transcription	Psoas Muscle	Psoas
13	chr11:46849600-46866000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:46849600-46866200	Weak transcription	HSMM	muscle
15	chr11:46849600-46866600	Weak transcription	Brain Angular Gyrus	brain
16	chr11:46850000-46866000	Weak transcription	NHLF	lung
17	chr11:46850000-46866600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:46850200-46865800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:46850400-46866000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:46850400-46866400	Weak transcription	Osteobl	bone
21	chr11:46856400-46865400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:46856600-46866200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:46856600-46866600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr11:46857000-46866200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:46857400-46866400	Weak transcription	Fetal Intestine Large	intestine
26	chr11:46857600-46866200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr11:46857800-46865800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:46857800-46865800	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr11:46857800-46865800	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr11:46857800-46866000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr11:46857800-46866200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:46857800-46866600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr11:46857800-46866600	Weak transcription	Fetal Intestine Small	intestine
34	chr11:46857800-46866800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr11:46858600-46865800	Weak transcription	Fetal Brain Female	brain
36	chr11:46859200-46866400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr11:46859600-46866000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr11:46859800-46866200	Weak transcription	Primary T cells from cord blood	blood
39	chr11:46860000-46865200	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr11:46860000-46865200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr11:46860000-46866600	Weak transcription	Stomach Mucosa	stomach
42	chr11:46860000-46867000	Weak transcription	Lung	lung
43	chr11:46860000-46867000	Weak transcription	Small Intestine	intestine
44	chr11:46860200-46865800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr11:46860200-46866400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr11:46860200-46867000	Weak transcription	Pancreas	Pancrea
47	chr11:46860400-46866200	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr11:46860400-46867000	Weak transcription	Left Ventricle	heart
49	chr11:46860600-46866000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr11:46860800-46865400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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