Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10093917	0.85[EUR][1000 genomes]
rs12114990	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1551907	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551908	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919316	0.95[ASN][1000 genomes]
rs16919325	0.95[ASN][1000 genomes]
rs1871093	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28414831	0.81[EUR][1000 genomes]
rs28448344	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28498249	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28679737	0.83[EUR][1000 genomes]
rs6473843	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6473849	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6983490	0.89[EUR][1000 genomes]
rs6987393	0.89[EUR][1000 genomes]
rs7004899	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7008567	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7009706	0.85[EUR][1000 genomes]
rs7011096	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73680192	0.85[EUR][1000 genomes]
rs73680445	0.89[EUR][1000 genomes]
rs73680446	0.89[EUR][1000 genomes]
rs73682504	0.81[EUR][1000 genomes]
rs73682506	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752674	chr8:54181147-54483747	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54459400-54463800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:54461200-54462800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:54461400-54462800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:54462000-54462800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr8:54462000-54462800	Enhancers	Fetal Heart	heart
6	chr8:54462600-54462800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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