Variant report

Variant	rs1553728
Chromosome Location	chr9:15667702-15667703
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 214 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:198)

rs_ID	r²[population]
rs10118359	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10121393	0.81[EUR][1000 genomes]
rs10121591	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10122339	0.82[ASN][1000 genomes]
rs10123042	0.90[ASN][1000 genomes]
rs1039813	0.87[EUR][1000 genomes]
rs1039814	0.87[EUR][1000 genomes]
rs10481557	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs10733295	0.85[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10733305	0.96[CEU][hapmap]
rs10738402	0.90[EUR][1000 genomes]
rs10738403	0.84[EUR][1000 genomes]
rs10738404	0.90[EUR][1000 genomes]
rs10738405	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10738406	0.91[EUR][1000 genomes]
rs10756671	0.89[CEU][hapmap]
rs10756674	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs10756676	0.87[EUR][1000 genomes]
rs10756677	0.96[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes]
rs10756678	0.88[EUR][1000 genomes]
rs10756679	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs10756680	0.91[EUR][1000 genomes]
rs10756686	0.92[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10756687	0.96[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10756688	0.96[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10756689	0.96[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10756690	0.96[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10756692	0.88[EUR][1000 genomes]
rs10756693	0.88[EUR][1000 genomes]
rs10756694	0.90[EUR][1000 genomes]
rs10756695	0.89[EUR][1000 genomes]
rs10756696	0.88[EUR][1000 genomes]
rs10756697	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs10756704	0.89[CEU][hapmap]
rs10810399	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs10810400	0.85[EUR][1000 genomes]
rs10810401	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs10810402	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs10810405	0.86[EUR][1000 genomes]
rs10810407	0.84[EUR][1000 genomes]
rs10810408	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs10810409	0.91[EUR][1000 genomes]
rs10810410	0.83[EUR][1000 genomes]
rs10810416	0.83[CEU][hapmap];0.82[ASN][1000 genomes]
rs10810419	0.80[CEU][hapmap];0.84[ASN][1000 genomes]
rs10810422	0.90[ASN][1000 genomes]
rs10810424	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10810426	0.80[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10810427	0.80[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810428	0.96[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10810429	0.80[CEU][hapmap]
rs10810431	0.90[EUR][1000 genomes]
rs10810432	0.90[EUR][1000 genomes]
rs10810433	0.91[EUR][1000 genomes]
rs10810434	0.91[EUR][1000 genomes]
rs10810435	0.89[EUR][1000 genomes]
rs10810436	0.88[EUR][1000 genomes]
rs10810438	0.80[CEU][hapmap];0.83[CHB][hapmap];0.80[JPT][hapmap]
rs10810439	0.96[CEU][hapmap]
rs10810440	0.82[CEU][hapmap];0.89[CHB][hapmap]
rs10810442	0.86[CEU][hapmap]
rs10810455	0.96[CEU][hapmap]
rs10962066	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs10962070	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs10962072	0.83[EUR][1000 genomes]
rs10962073	0.82[EUR][1000 genomes]
rs10962098	0.96[CEU][hapmap];0.89[CHB][hapmap];0.89[EUR][1000 genomes]
rs10962099	0.96[CEU][hapmap];0.89[CHB][hapmap];0.89[EUR][1000 genomes]
rs10962106	0.84[ASN][1000 genomes]
rs10962110	0.93[CEU][hapmap];0.94[EUR][1000 genomes]
rs10962124	0.90[EUR][1000 genomes]
rs10962126	0.85[CEU][hapmap];0.89[CHB][hapmap]
rs10962142	0.85[CEU][hapmap]
rs10962149	0.89[CEU][hapmap]
rs10962151	0.89[CEU][hapmap]
rs10962157	0.89[CEU][hapmap]
rs10962158	0.89[CEU][hapmap]
rs11789538	0.85[EUR][1000 genomes]
rs11789563	0.90[EUR][1000 genomes]
rs11791627	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11792937	0.82[ASN][1000 genomes]
rs12340969	0.93[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12341679	0.82[CEU][hapmap];0.89[CHB][hapmap]
rs12377371	0.80[CEU][hapmap]
rs13291638	0.91[EUR][1000 genomes]
rs13301516	0.84[ASN][1000 genomes]
rs1355171	0.85[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1396707	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs1396708	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs1509310	0.90[EUR][1000 genomes]
rs1533040	0.96[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs169342	0.83[CEU][hapmap];0.89[CHB][hapmap]
rs1812686	0.88[EUR][1000 genomes]
rs183928	0.83[CEU][hapmap];0.89[CHB][hapmap]
rs1848582	0.84[ASN][1000 genomes]
rs2055772	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs2105315	0.80[CEU][hapmap]
rs2105317	0.89[CEU][hapmap]
rs2136355	0.91[EUR][1000 genomes]
rs2175080	0.81[CEU][hapmap]
rs2175082	0.89[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2382532	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2382534	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs2382538	0.90[EUR][1000 genomes]
rs276435	0.82[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap]
rs276436	0.83[CEU][hapmap];0.89[CHB][hapmap]
rs276448	0.83[CEU][hapmap]
rs276449	0.83[CEU][hapmap]
rs276453	0.83[CEU][hapmap]
rs276455	0.83[CEU][hapmap]
rs3119699	0.85[CEU][hapmap]
rs35146544	0.85[EUR][1000 genomes]
rs3955162	0.85[EUR][1000 genomes]
rs4146290	0.89[CEU][hapmap]
rs4146291	0.89[CEU][hapmap]
rs4281189	0.82[EUR][1000 genomes]
rs432452	0.83[CEU][hapmap]
rs433849	0.81[CEU][hapmap]
rs4339736	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs442549	0.83[CEU][hapmap]
rs4448380	0.87[EUR][1000 genomes]
rs451878	0.85[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4740614	0.82[CEU][hapmap]
rs4740615	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs4740618	0.87[EUR][1000 genomes]
rs4740619	0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4740620	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4740621	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4740622	0.92[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4740624	0.96[CEU][hapmap]
rs4741510	0.81[CEU][hapmap]
rs4741515	0.87[EUR][1000 genomes]
rs4741517	0.88[EUR][1000 genomes]
rs4741519	0.96[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes]
rs4741520	0.87[EUR][1000 genomes]
rs4741527	0.81[EUR][1000 genomes]
rs4741528	0.96[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4741529	0.94[EUR][1000 genomes]
rs4741534	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs4741535	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs6474931	0.96[CEU][hapmap];0.83[CHB][hapmap];0.84[EUR][1000 genomes]
rs6474942	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6474944	0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6474945	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6474946	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6474952	0.81[CEU][hapmap]
rs6474953	0.91[EUR][1000 genomes]
rs6474954	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs6474955	0.91[EUR][1000 genomes]
rs6474966	0.86[CEU][hapmap];0.82[CHB][hapmap]
rs6474974	0.89[CEU][hapmap]
rs7019430	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7023275	0.85[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs7024640	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7025669	0.96[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7030846	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7031365	0.84[ASN][1000 genomes]
rs7032755	0.89[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7032877	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7033236	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7034484	0.93[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7034781	0.82[CEU][hapmap];0.83[CHB][hapmap]
rs7035863	0.82[CEU][hapmap];0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs7036172	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7036674	0.96[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7036875	0.90[ASN][1000 genomes]
rs7042475	0.84[ASN][1000 genomes]
rs7044122	0.87[EUR][1000 genomes]
rs7045018	0.89[CEU][hapmap]
rs7046351	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7049101	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7049176	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7389047	0.89[EUR][1000 genomes]
rs7389629	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs7467156	0.80[CEU][hapmap];0.89[CHB][hapmap]
rs7467207	0.82[CEU][hapmap];0.83[CHB][hapmap]
rs770524	0.82[CEU][hapmap]
rs7847144	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs7848511	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7851056	0.84[ASN][1000 genomes]
rs7854714	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7855235	0.91[EUR][1000 genomes]
rs7859780	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7860623	0.86[EUR][1000 genomes]
rs7860755	0.89[CEU][hapmap]
rs7860869	0.80[CEU][hapmap]
rs7861004	0.89[EUR][1000 genomes]
rs7863088	0.96[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7868779	0.84[EUR][1000 genomes]
rs7873152	0.85[CEU][hapmap]
rs7873776	0.89[CEU][hapmap]
rs7874533	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs7875367	0.85[CEU][hapmap]
rs950234	0.83[CEU][hapmap]
rs954663	0.80[CEU][hapmap]
rs955369	0.89[CEU][hapmap]
rs9696751	0.87[EUR][1000 genomes]
rs9886779	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv892630	chr9:15554960-15694690	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv613653	chr9:15590116-15668606	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv892631	chr9:15590116-15694690	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv613655	chr9:15602101-15670445	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv613656	chr9:15615321-15696501	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv466262	chr9:15615321-15727518	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv613657	chr9:15615321-15727518	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv613658	chr9:15636260-15727518	Strong transcription Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv466263	chr9:15641279-15726057	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv613659	chr9:15641279-15726057	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15645600-15689200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:15655200-15691600	Weak transcription	Thymus	Thymus
3	chr9:15666800-15671600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:15667000-15670800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr9:15667200-15670800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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