Variant report

Variant rs1554597
Chromosome Location chr1:85877098-85877099
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85871400-85878400 Weak transcription Fetal Muscle Leg muscle
2 chr1:85872000-85877200 Weak transcription Skeletal Muscle Female skeletal muscle
3 chr1:85873200-85879600 Weak transcription Brain Cingulate Gyrus brain
4 chr1:85873400-85882800 Weak transcription Skeletal Muscle Male skeletal muscle
5 chr1:85873600-85885000 Weak transcription Fetal Intestine Large intestine
6 chr1:85873800-85882000 Weak transcription Fetal Intestine Small intestine
7 chr1:85873800-85885400 Weak transcription Fetal Stomach stomach
8 chr1:85873800-85887600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr1:85874000-85877400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
10 chr1:85874000-85878000 Weak transcription Stomach Mucosa stomach
11 chr1:85874000-85903800 Weak transcription NHLF lung
12 chr1:85874200-85903600 Weak transcription Muscle Satellite Cultured Cells --
13 chr1:85874400-85903600 Weak transcription HepG2 liver
14 chr1:85874400-85904200 Weak transcription NH-A brain
15 chr1:85874600-85877200 Weak transcription Aorta Aorta
16 chr1:85875000-85882800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
17 chr1:85875200-85877400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr1:85875400-85877200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
19 chr1:85875400-85877400 Weak transcription Cortex derived primary cultured neurospheres brain
20 chr1:85875400-85878800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr1:85875400-85880000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
22 chr1:85875400-85885600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr1:85876000-85877200 Weak transcription Pancreas Pancrea
24 chr1:85876600-85877200 Enhancers H1 Cell Line embryonic stem cell
25 chr1:85876600-85877400 Enhancers H9 Cell Line embryonic stem cell
26 chr1:85876600-85877400 Enhancers iPS-15b Cell Line embryonic stem cell
27 chr1:85876600-85877600 Enhancers HSMMtube muscle
28 chr1:85876600-85877800 Enhancers HUES6 Cell Line embryonic stem cell
29 chr1:85876600-85878000 Enhancers HUES48 Cell Line embryonic stem cell
30 chr1:85876600-85878200 Genic enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr1:85876800-85878200 Enhancers HUES64 Cell Line embryonic stem cell
32 chr1:85876800-85878400 Enhancers ES-I3 Cell Line embryonic stem cell
33 chr1:85876800-85878400 Enhancers iPS-18 Cell Line embryonic stem cell
34 chr1:85876800-85878400 Enhancers iPS-20b Cell Line embryonic stem cell
35 chr1:85876800-85878400 Genic enhancers Osteobl bone
36 chr1:85876800-85880000 Strong transcription HSMM muscle
37 chr1:85877000-85877200 Enhancers Liver Liver
38 chr1:85877000-85877600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr1:85877000-85877600 Enhancers HUVEC blood vessel
40 chr1:85877000-85878400 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
41 chr1:85877000-85878800 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
42 chr1:85877000-85879000 Enhancers Ovary ovary
43 chr1:85877000-85880400 Enhancers NHDF-Ad bronchial

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