Variant report

Variant	rs1555333
Chromosome Location	chr14:37508320-37508321
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10047907	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10047908	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10129311	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10131531	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10133042	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10134363	0.81[EUR][1000 genomes]
rs10135756	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10136164	0.82[AMR][1000 genomes]
rs10136755	0.81[EUR][1000 genomes]
rs10136870	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10137595	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137611	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10140136	0.83[EUR][1000 genomes]
rs10140373	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10148080	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10148097	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10148311	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10148351	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10148406	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10148426	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11156932	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12433348	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12892728	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12894067	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12894251	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12897058	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1467484	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1467485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1467486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1467487	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1467488	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1467489	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1467490	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1467491	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1467492	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1467493	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106133	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1950816	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1956422	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1956425	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2022726	0.83[EUR][1000 genomes]
rs2057271	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2180600	0.93[ASN][1000 genomes]
rs2415374	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2415375	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2415376	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2415377	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2415378	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28411825	0.81[EUR][1000 genomes]
rs28437272	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28466578	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28796569	0.80[EUR][1000 genomes]
rs28826308	0.81[EUR][1000 genomes]
rs34592617	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35844261	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36105433	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4328351	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4408459	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56113646	0.81[EUR][1000 genomes]
rs6571773	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6571774	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6571775	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6571778	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6571779	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6571780	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7142225	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs714268	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs714269	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7146275	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7149154	0.81[EUR][1000 genomes]
rs7149490	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7153530	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7160964	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7359049	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7359050	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004339	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005022	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008912	0.89[ASN][1000 genomes]
rs8009178	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8011174	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8011715	0.90[ASN][1000 genomes]
rs8014426	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8016428	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8017060	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8022248	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9743793	0.81[EUR][1000 genomes]
rs9888610	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9919903	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1036201	chr14:37498841-37542041	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1037719	chr14:37498841-37546359	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv526786	chr14:37499904-37537352	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1048854	chr14:37505438-37546359	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37504800-37508400	Enhancers	H9 Cell Line	embryonic stem cell
2	chr14:37505200-37509000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr14:37507600-37508600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:37507800-37508400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:37508000-37508400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr14:37508200-37508400	Bivalent Enhancer	HepG2	liver

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