The 2.0 version of rSNPBase

Variant report

Variant rs1555382
Chromosome Location chr1:172013849-172013850
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:171994000-172020400 Weak transcription Left Ventricle heart
2 chr1:172001400-172019000 Weak transcription Fetal Brain Male brain
3 chr1:172004000-172014000 Weak transcription Lung lung
4 chr1:172005600-172015200 Weak transcription HSMMtube muscle
5 chr1:172006400-172025600 Weak transcription Adipose Nuclei Adipose
6 chr1:172007600-172014000 Weak transcription Brain Substantia Nigra brain
7 chr1:172007600-172014800 Weak transcription Thymus Thymus
8 chr1:172009200-172022800 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr1:172010000-172022200 Weak transcription ES-I3 Cell Line embryonic stem cell
10 chr1:172010400-172014000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
11 chr1:172010400-172022000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
12 chr1:172010600-172014800 Weak transcription Aorta Aorta
13 chr1:172010600-172022400 Weak transcription HMEC breast
14 chr1:172010600-172051400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr1:172010800-172019800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr1:172010800-172022400 Weak transcription NHEK skin
17 chr1:172010800-172037600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
18 chr1:172011000-172019600 Weak transcription Stomach Smooth Muscle stomach
19 chr1:172011400-172037800 Weak transcription Ovary ovary
20 chr1:172012000-172014000 Weak transcription Fetal Kidney kidney
21 chr1:172012400-172015000 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
22 chr1:172012600-172022600 Weak transcription Fetal Lung lung
23 chr1:172012800-172015200 Strong transcription Breast Myoepithelial Primary Cells Breast
24 chr1:172013000-172022400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
25 chr1:172013200-172014000 Enhancers Primary T cells from cord blood blood
26 chr1:172013200-172014000 Enhancers Primary T helper cells PMA-I stimulated --
27 chr1:172013200-172014000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
28 chr1:172013200-172014200 Enhancers Primary T helper naive cells from peripheral blood blood
29 chr1:172013200-172014200 Enhancers Primary T helper naive cells fromperipheralblood blood
30 chr1:172013400-172014200 Enhancers Dnd41 blood
31 chr1:172013400-172014800 Strong transcription Brain Anterior Caudate brain
32 chr1:172013400-172015200 Strong transcription Brain Cingulate Gyrus brain
33 chr1:172013600-172014000 Enhancers Primary neutrophils fromperipheralblood blood
34 chr1:172013600-172014000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
35 chr1:172013600-172014000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
36 chr1:172013800-172014200 Enhancers Primary T cells fromperipheralblood blood
37 chr1:172013800-172014200 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
38 chr1:172013800-172014600 Strong transcription Brain Germinal Matrix brain
39 chr1:172013800-172015000 Strong transcription Cortex derived primary cultured neurospheres brain
40 chr1:172013800-172015000 Strong transcription Fetal Adrenal Gland Adrenal Gland
41 chr1:172013800-172015000 Strong transcription Fetal Brain Female brain
42 chr1:172013800-172015200 Strong transcription Brain Angular Gyrus brain
43 chr1:172013800-172015200 Strong transcription Brain Hippocampus Middle brain
44 chr1:172013800-172015200 Strong transcription Brain Inferior Temporal Lobe brain

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Last update: Aug 31, 2015