Variant report

Variant	rs1556904
Chromosome Location	chr1:215361544-215361545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215361168..215363733-chr1:215415498..215417578,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10465665	1.00[EUR][1000 genomes]
rs10864176	1.00[EUR][1000 genomes]
rs11120520	1.00[EUR][1000 genomes]
rs11120521	1.00[EUR][1000 genomes]
rs11120523	1.00[EUR][1000 genomes]
rs11120553	1.00[EUR][1000 genomes]
rs11120555	1.00[EUR][1000 genomes]
rs11120556	1.00[EUR][1000 genomes]
rs11120570	1.00[EUR][1000 genomes]
rs11120571	1.00[EUR][1000 genomes]
rs11120572	1.00[EUR][1000 genomes]
rs11120573	1.00[EUR][1000 genomes]
rs11120574	1.00[EUR][1000 genomes]
rs12061570	1.00[EUR][1000 genomes]
rs12070211	1.00[EUR][1000 genomes]
rs12074526	1.00[EUR][1000 genomes]
rs12076291	1.00[EUR][1000 genomes]
rs12076683	1.00[EUR][1000 genomes]
rs12077050	1.00[EUR][1000 genomes]
rs12077731	1.00[EUR][1000 genomes]
rs12077775	1.00[EUR][1000 genomes]
rs12078628	1.00[EUR][1000 genomes]
rs12079873	1.00[EUR][1000 genomes]
rs12080017	1.00[EUR][1000 genomes]
rs12094048	1.00[EUR][1000 genomes]
rs12095159	1.00[EUR][1000 genomes]
rs12239472	1.00[EUR][1000 genomes]
rs12239509	1.00[EUR][1000 genomes]
rs13374480	1.00[EUR][1000 genomes]
rs13374655	1.00[EUR][1000 genomes]
rs1416650	1.00[EUR][1000 genomes]
rs1556906	0.94[YRI][hapmap]
rs17024391	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17024751	1.00[EUR][1000 genomes]
rs1911547	1.00[EUR][1000 genomes]
rs2363552	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs2363555	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2363562	1.00[EUR][1000 genomes]
rs4082520	1.00[EUR][1000 genomes]
rs4082521	1.00[EUR][1000 genomes]
rs4265403	1.00[EUR][1000 genomes]
rs4581247	1.00[EUR][1000 genomes]
rs4593794	1.00[EUR][1000 genomes]
rs4633260	1.00[EUR][1000 genomes]
rs5019190	1.00[EUR][1000 genomes]
rs59473177	1.00[EUR][1000 genomes]
rs60597792	1.00[EUR][1000 genomes]
rs61272547	1.00[EUR][1000 genomes]
rs6678266	1.00[EUR][1000 genomes]
rs73088281	1.00[EUR][1000 genomes]
rs73088299	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73091976	1.00[EUR][1000 genomes]
rs73091981	1.00[EUR][1000 genomes]
rs7528816	1.00[EUR][1000 genomes]
rs7535436	0.81[YRI][hapmap]
rs7550501	1.00[EUR][1000 genomes]
rs7551562	0.81[YRI][hapmap]
rs950987	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215356000-215364800	Weak transcription	NHLF	lung
2	chr1:215356000-215368400	Weak transcription	Fetal Brain Female	brain
3	chr1:215356200-215361800	Weak transcription	HSMM	muscle
4	chr1:215356200-215364400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:215356200-215365200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:215356400-215361800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:215360600-215363000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:215360800-215362800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:215361000-215362400	Enhancers	Osteobl	bone
10	chr1:215361000-215362600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:215361000-215363000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:215361200-215361600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:215361400-215362400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:215361400-215362400	Enhancers	NHDF-Ad	bronchial

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