Variant report

Variant	rs1556993
Chromosome Location	chr6:102263353-102263354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10485276	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11156157	0.81[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs11962789	0.81[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs1325060	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs1340266	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361444	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1361446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1408767	0.91[ASN][1000 genomes]
rs1408768	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1555775	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs1965603	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs2038842	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039853	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147714	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246394	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2399635	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]
rs2399636	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2518191	0.81[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs2518193	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2518198	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2518200	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2518201	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2518202	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2518203	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2518206	0.82[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs2518266	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs2518267	0.82[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs2518268	0.82[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs2518270	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2764218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2764220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2764222	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2764223	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2764224	0.86[JPT][hapmap]
rs2764225	0.81[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs2764226	0.90[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2764228	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2764229	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2764230	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2764231	0.80[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs2764233	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2764236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2791812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2791817	0.91[JPT][hapmap]
rs2791818	1.00[CEU][hapmap];0.91[JPT][hapmap];0.93[YRI][hapmap]
rs2791819	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2791821	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs2791823	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2791826	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2791827	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2791832	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2791834	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2791837	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2852573	0.86[JPT][hapmap]
rs2852574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2852576	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs4839802	0.80[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs4839803	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs4839804	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs4840195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4840196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4840197	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs4840198	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs4840199	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs6922753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7749469	0.91[JPT][hapmap]
rs7754022	0.91[JPT][hapmap]
rs7775876	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9322609	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs9322611	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9322613	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs9377306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9377307	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9377308	0.81[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs9377314	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs9386291	0.91[JPT][hapmap]
rs9386293	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9386294	0.81[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs9390779	0.81[CHB][hapmap]
rs9390784	0.86[ASN][1000 genomes]
rs9390785	0.89[ASN][1000 genomes]
rs9390788	0.81[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs9399728	0.90[CEU][hapmap];0.95[JPT][hapmap]
rs9399732	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9399733	0.88[CEU][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs9404145	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs9404148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9404152	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs9404153	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs9498691	0.89[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap]
rs9498693	0.91[JPT][hapmap]
rs9498695	0.91[JPT][hapmap]
rs9498701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9498702	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9498703	0.81[ASN][1000 genomes]
rs9498713	0.81[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs9498727	0.82[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1819438	chr6:102211675-102279200	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1825149	chr6:102249515-102279200	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv933199	chr6:102249974-102266088	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
6	nsv933514	chr6:102250150-102266088	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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