Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10170708	1.00[AMR][1000 genomes]
rs11894334	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12466464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13424791	1.00[AMR][1000 genomes]
rs16843914	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs16843974	1.00[AMR][1000 genomes]
rs16843979	1.00[MEX][hapmap]
rs16843983	1.00[MEX][hapmap]
rs17745941	1.00[CHB][hapmap]
rs2159745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2215626	1.00[MEX][hapmap]
rs41432449	1.00[AMR][1000 genomes]
rs41502644	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs4673488	1.00[AFR][1000 genomes]
rs6435539	1.00[MEX][hapmap]
rs6741657	1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6758085	1.00[MEX][hapmap]
rs7572221	0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs758942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7593770	1.00[MEX][hapmap]
rs7608699	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv3142	chr2:210660150-210705006	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210652200-210685000	Weak transcription	Brain Angular Gyrus	brain
2	chr2:210652400-210681000	Weak transcription	Brain Anterior Caudate	brain
3	chr2:210665800-210681800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:210667600-210678200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:210670800-210671600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr2:210670800-210671800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:210671000-210671600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:210671000-210671600	Enhancers	Brain Germinal Matrix	brain
9	chr2:210671000-210671800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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