Variant report

Variant	rs1560228
Chromosome Location	chr4:148291697-148291698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10024834	1.00[YRI][hapmap]
rs1005771	1.00[CEU][hapmap];0.90[LWK][hapmap]
rs1366692	0.87[AMR][1000 genomes]
rs1366694	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1429138	0.87[AMR][1000 genomes]
rs1429140	0.87[AMR][1000 genomes]
rs2115561	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4835078	0.80[AMR][1000 genomes]
rs4835079	0.87[AMR][1000 genomes]
rs4835396	0.84[AMR][1000 genomes]
rs6817192	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6823869	0.87[AMR][1000 genomes]
rs934142	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830108	chr4:148114652-148311104	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148281600-148297000	Weak transcription	Left Ventricle	heart
2	chr4:148284800-148293000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:148288800-148293600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:148288800-148293600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr4:148288800-148293600	Enhancers	NH-A	brain
6	chr4:148288800-148293600	Enhancers	NHDF-Ad	bronchial
7	chr4:148289400-148291800	Enhancers	Fetal Stomach	stomach
8	chr4:148290200-148293600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:148290200-148293800	Enhancers	HMEC	breast
10	chr4:148290400-148292200	Enhancers	NHEK	skin
11	chr4:148290400-148293600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:148290400-148293800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:148290600-148291800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:148290600-148292800	Enhancers	Fetal Intestine Small	intestine
15	chr4:148290600-148293400	Enhancers	Osteobl	bone
16	chr4:148290800-148292400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:148291200-148291800	Enhancers	Ovary	ovary
18	chr4:148291200-148292600	Enhancers	Small Intestine	intestine
19	chr4:148291200-148293400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:148291400-148291800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr4:148291400-148291800	Enhancers	Fetal Intestine Large	intestine
22	chr4:148291400-148292800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr4:148291400-148293400	Enhancers	Stomach Mucosa	stomach
24	chr4:148291600-148292000	Enhancers	NHLF	lung
25	chr4:148291600-148292200	Enhancers	Fetal Lung	lung
26	chr4:148291600-148292400	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr4:148291600-148292400	Enhancers	Esophagus	oesophagus
28	chr4:148291600-148292400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr4:148291600-148292400	Enhancers	Lung	lung
30	chr4:148291600-148293000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr4:148291600-148293400	Enhancers	Hela-S3	cervix
32	chr4:148291600-148293600	Enhancers	HSMM	muscle
33	chr4:148291600-148293600	Enhancers	HUVEC	blood vessel

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