Variant report

Variant	rs1561187
Chromosome Location	chr1:217007298-217007299
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10157291	1.00[MEX][hapmap]
rs10779281	0.83[YRI][hapmap]
rs11572442	1.00[ASW][hapmap]
rs1361331	1.00[MEX][hapmap]
rs17041526	1.00[ASW][hapmap]
rs17044802	1.00[ASW][hapmap]
rs17044815	1.00[ASW][hapmap]
rs2576239	1.00[MEX][hapmap]
rs2813676	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6700565	1.00[MEX][hapmap]
rs9660947	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217004400-217014600	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:217004800-217008400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:217005600-217009800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:217005800-217008000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr1:217006000-217038000	Weak transcription	Pancreas	Pancrea
6	chr1:217007000-217007400	Enhancers	Right Ventricle	heart
7	chr1:217007200-217007400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:217007200-217007400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:217007200-217007400	Enhancers	Psoas Muscle	Psoas
10	chr1:217007200-217007600	Enhancers	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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