Variant report

Variant	rs156367
Chromosome Location	chr18:30685490-30685491
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs11660410	0.81[ASN][1000 genomes]
rs1482946	0.81[ASN][1000 genomes]
rs156186	0.88[ASN][1000 genomes]
rs156366	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs156368	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs156369	0.81[ASN][1000 genomes]
rs1600999	0.83[ASN][1000 genomes]
rs166639	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16964280	0.83[ASN][1000 genomes]
rs16964286	0.83[ASN][1000 genomes]
rs182105	0.81[ASN][1000 genomes]
rs190614	0.81[ASN][1000 genomes]
rs200432	0.81[ASN][1000 genomes]
rs2626370	0.81[ASN][1000 genomes]
rs271434	0.91[ASN][1000 genomes]
rs271435	0.91[ASN][1000 genomes]
rs271436	0.91[ASN][1000 genomes]
rs271437	0.91[ASN][1000 genomes]
rs271438	0.88[ASN][1000 genomes]
rs271443	0.81[ASN][1000 genomes]
rs271444	0.81[ASN][1000 genomes]
rs271445	0.81[ASN][1000 genomes]
rs271446	0.81[ASN][1000 genomes]
rs271447	0.81[ASN][1000 genomes]
rs271448	0.81[ASN][1000 genomes]
rs271449	0.81[ASN][1000 genomes]
rs271450	0.81[ASN][1000 genomes]
rs271451	0.81[ASN][1000 genomes]
rs271452	0.81[ASN][1000 genomes]
rs271453	0.81[ASN][1000 genomes]
rs271462	0.81[ASN][1000 genomes]
rs271463	0.81[ASN][1000 genomes]
rs271469	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs271480	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs271482	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs271483	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs271484	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs271486	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs271487	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs271488	0.94[ASN][1000 genomes]
rs271490	0.81[ASN][1000 genomes]
rs271491	0.81[ASN][1000 genomes]
rs271492	0.81[ASN][1000 genomes]
rs271493	0.81[ASN][1000 genomes]
rs271494	0.81[ASN][1000 genomes]
rs271495	0.81[ASN][1000 genomes]
rs271497	0.81[ASN][1000 genomes]
rs271498	0.81[ASN][1000 genomes]
rs271499	0.81[ASN][1000 genomes]
rs271500	0.81[ASN][1000 genomes]
rs271502	0.81[ASN][1000 genomes]
rs271526	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs271527	0.81[ASN][1000 genomes]
rs271528	0.81[ASN][1000 genomes]
rs271529	0.81[ASN][1000 genomes]
rs271530	0.81[ASN][1000 genomes]
rs271559	0.88[ASN][1000 genomes]
rs271560	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs271561	0.84[ASN][1000 genomes]
rs271564	0.84[ASN][1000 genomes]
rs271565	0.84[ASN][1000 genomes]
rs271570	0.84[ASN][1000 genomes]
rs271571	0.84[ASN][1000 genomes]
rs271572	0.84[ASN][1000 genomes]
rs271573	0.84[ASN][1000 genomes]
rs271575	0.81[ASN][1000 genomes]
rs271577	0.81[ASN][1000 genomes]
rs271578	0.81[ASN][1000 genomes]
rs271579	0.81[ASN][1000 genomes]
rs271581	0.81[ASN][1000 genomes]
rs271583	0.81[ASN][1000 genomes]
rs271585	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs273023	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs273024	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs273025	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs273026	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs273027	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs273028	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs28504670	0.83[ASN][1000 genomes]
rs402801	0.81[ASN][1000 genomes]
rs418480	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs457802	0.81[ASN][1000 genomes]
rs458002	0.81[ASN][1000 genomes]
rs463489	0.81[ASN][1000 genomes]
rs466500	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs56292815	0.83[ASN][1000 genomes]
rs56983919	0.83[ASN][1000 genomes]
rs7351029	0.88[JPT][hapmap]
rs8090816	0.84[AMR][1000 genomes]
rs968668	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909527	chr18:30548902-30908581	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv833617	chr18:30555111-30693587	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1058332	chr18:30587430-30775498	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv978722	chr18:30680573-30689432	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30685400-30687400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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