Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10212348	1.00[EUR][1000 genomes]
rs10212349	1.00[EUR][1000 genomes]
rs10212350	1.00[EUR][1000 genomes]
rs10212351	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs11914439	1.00[EUR][1000 genomes]
rs11925181	1.00[EUR][1000 genomes]
rs11927187	1.00[EUR][1000 genomes]
rs13067904	1.00[EUR][1000 genomes]
rs1381071	1.00[EUR][1000 genomes]
rs1563939	1.00[EUR][1000 genomes]
rs16824706	1.00[EUR][1000 genomes]
rs1882011	1.00[EUR][1000 genomes]
rs1920188	1.00[MEX][hapmap]
rs1920361	1.00[EUR][1000 genomes]
rs35319164	1.00[EUR][1000 genomes]
rs4277686	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59092560	1.00[EUR][1000 genomes]
rs59700272	1.00[EUR][1000 genomes]
rs6438298	1.00[EUR][1000 genomes]
rs6768516	1.00[EUR][1000 genomes]
rs6781359	1.00[EUR][1000 genomes]
rs6791561	1.00[EUR][1000 genomes]
rs6796602	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72947992	1.00[EUR][1000 genomes]
rs72959750	1.00[EUR][1000 genomes]
rs72959752	1.00[EUR][1000 genomes]
rs9283565	1.00[EUR][1000 genomes]
rs9289043	1.00[EUR][1000 genomes]
rs9289044	1.00[EUR][1000 genomes]
rs9818490	1.00[EUR][1000 genomes]
rs9830788	1.00[EUR][1000 genomes]
rs9835051	1.00[EUR][1000 genomes]
rs9856732	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv1808373	chr3:115952799-115984473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115949600-115965400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr3:115953200-115965400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:115957600-115965400	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:115958200-115969800	Weak transcription	Brain Angular Gyrus	brain
5	chr3:115961000-115971000	Weak transcription	Brain Anterior Caudate	brain
6	chr3:115961600-115962600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:115961800-115962600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr3:115961800-115962600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr3:115962200-115963200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:115962200-115965600	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:115962400-115983200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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