Variant report

Variant	rs1563939
Chromosome Location	chr3:115978622-115978623
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10212348	1.00[EUR][1000 genomes]
rs10212349	1.00[EUR][1000 genomes]
rs10212350	1.00[EUR][1000 genomes]
rs10212351	1.00[EUR][1000 genomes]
rs11914439	1.00[EUR][1000 genomes]
rs11925181	1.00[EUR][1000 genomes]
rs11927187	1.00[EUR][1000 genomes]
rs13067904	1.00[EUR][1000 genomes]
rs1381071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1563936	1.00[EUR][1000 genomes]
rs16824706	1.00[EUR][1000 genomes]
rs1882011	1.00[EUR][1000 genomes]
rs1920361	1.00[EUR][1000 genomes]
rs2903482	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35319164	1.00[EUR][1000 genomes]
rs4277686	1.00[EUR][1000 genomes]
rs59092560	1.00[EUR][1000 genomes]
rs59700272	1.00[EUR][1000 genomes]
rs6438298	1.00[EUR][1000 genomes]
rs6768516	1.00[EUR][1000 genomes]
rs6781359	1.00[EUR][1000 genomes]
rs6791561	1.00[EUR][1000 genomes]
rs6796602	1.00[EUR][1000 genomes]
rs72947992	1.00[EUR][1000 genomes]
rs72959750	1.00[EUR][1000 genomes]
rs72959752	1.00[EUR][1000 genomes]
rs9283565	1.00[EUR][1000 genomes]
rs9289043	1.00[EUR][1000 genomes]
rs9289044	1.00[EUR][1000 genomes]
rs9818490	1.00[EUR][1000 genomes]
rs9830788	1.00[EUR][1000 genomes]
rs9835051	1.00[EUR][1000 genomes]
rs9856732	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv1808373	chr3:115952799-115984473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115962400-115983200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:115965800-115983200	Weak transcription	Fetal Brain Male	brain
3	chr3:115971200-115984800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:115973000-115983800	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:115976000-115987000	Weak transcription	Brain Anterior Caudate	brain
6	chr3:115976200-115979400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:115976200-115982800	Weak transcription	Fetal Lung	lung
8	chr3:115976200-115984000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr3:115976200-115987000	Weak transcription	Brain Angular Gyrus	brain
10	chr3:115976600-115979400	Weak transcription	NHDF-Ad	bronchial
11	chr3:115976800-115982600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:115977000-115979000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:115977600-115979000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:115977800-115979600	Enhancers	Colon Smooth Muscle	Colon
15	chr3:115977800-115980400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:115977800-115981600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
17	chr3:115977800-115981800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
18	chr3:115978000-115979200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr3:115978000-115982600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:115978200-115979800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
21	chr3:115978400-115980400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:115978400-115983800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr3:115978600-115978800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
24	chr3:115978600-115979000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
25	chr3:115978600-115979600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
26	chr3:115978600-115981400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr3:115978600-115982000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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