Variant report

Variant	rs1564939
Chromosome Location	chr4:175651499-175651500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10000984	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10004534	0.86[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10007273	0.92[CHB][hapmap]
rs10009999	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs10011025	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10013656	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs10020688	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10213085	0.84[ASN][1000 genomes]
rs10471163	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10520290	0.86[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.82[MKK][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11725853	0.91[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs11737591	0.83[ASN][1000 genomes]
rs12499257	0.94[ASN][1000 genomes]
rs12504255	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12509326	1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12509729	0.84[JPT][hapmap];0.87[MEX][hapmap]
rs13142152	0.86[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1352056	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1485939	0.92[CHB][hapmap];0.81[JPT][hapmap]
rs1485941	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs1586338	0.92[CHB][hapmap];0.81[JPT][hapmap]
rs1586339	0.83[ASN][1000 genomes]
rs17060785	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28408827	0.83[ASN][1000 genomes]
rs28432255	0.81[ASN][1000 genomes]
rs28538678	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28688380	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2877828	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35706713	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4447833	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4594702	0.86[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6853281	0.86[ASW][hapmap];0.84[CEU][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap];0.83[ASN][1000 genomes]
rs7656851	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7658547	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7685854	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9312559	1.00[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap]
rs9884969	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1018390	chr4:175475505-175969742	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links