Variant report

Variant	rs1565890
Chromosome Location	chr5:116635241-116635242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10035146	0.84[EUR][1000 genomes]
rs10066055	0.87[EUR][1000 genomes]
rs10068349	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10068673	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10079309	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10080021	0.81[EUR][1000 genomes]
rs10085046	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10463690	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10478339	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11241420	0.83[ASN][1000 genomes]
rs11957082	0.81[EUR][1000 genomes]
rs12652528	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13170803	0.83[EUR][1000 genomes]
rs13184380	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1353285	0.84[EUR][1000 genomes]
rs1389934	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1389935	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1494820	0.83[EUR][1000 genomes]
rs1494821	0.86[EUR][1000 genomes]
rs1494823	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1565889	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1565892	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1908408	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1908409	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1976282	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2036024	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2220858	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2900101	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34469130	0.86[EUR][1000 genomes]
rs35793287	0.84[EUR][1000 genomes]
rs4331937	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4435900	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4642406	0.86[EUR][1000 genomes]
rs55813945	0.81[EUR][1000 genomes]
rs56020309	0.86[EUR][1000 genomes]
rs60269947	0.81[EUR][1000 genomes]
rs6595020	0.81[EUR][1000 genomes]
rs6595026	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6595028	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6862441	0.80[EUR][1000 genomes]
rs7702997	0.81[EUR][1000 genomes]
rs7703434	0.86[EUR][1000 genomes]
rs7712165	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7714476	0.81[EUR][1000 genomes]
rs7729749	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7730432	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7732328	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7735145	0.89[ASN][1000 genomes]
rs7735868	0.89[ASN][1000 genomes]
rs7736463	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015741	chr5:116525936-116665270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv599486	chr5:116607979-116669707	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116632600-116636200	Enhancers	Fetal Heart	heart
2	chr5:116632800-116636000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:116633400-116638400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:116633600-116638600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:116633600-116638600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:116634000-116635600	Enhancers	Fetal Stomach	stomach
7	chr5:116634200-116636400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:116634200-116637000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:116634200-116638600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:116634400-116635400	Weak transcription	Fetal Lung	lung
11	chr5:116635000-116635600	Enhancers	Brain Germinal Matrix	brain
12	chr5:116635000-116636000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr5:116635000-116636200	Enhancers	Colon Smooth Muscle	Colon
14	chr5:116635200-116635400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr5:116635200-116635800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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