Variant report

Variant	rs1567521
Chromosome Location	chr5:118160011-118160012
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:117502319..117505069-chr5:118158604..118161182,2	K562	blood:
2	chr5:118159743..118162265-chr5:118287763..118289308,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10447237	0.83[EUR][1000 genomes]
rs10447266	0.80[EUR][1000 genomes]
rs10519564	1.00[JPT][hapmap]
rs11949851	0.89[ASN][1000 genomes]
rs12109156	1.00[JPT][hapmap]
rs12187606	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12659444	0.95[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17132677	1.00[JPT][hapmap]
rs17144708	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17144714	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17144715	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17144716	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17144806	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17144824	1.00[JPT][hapmap]
rs17144836	1.00[JPT][hapmap];0.83[YRI][hapmap]
rs1864109	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2099092	0.82[AMR][1000 genomes]
rs2115301	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs2115302	0.82[AMR][1000 genomes]
rs2162888	0.82[AMR][1000 genomes]
rs2217310	1.00[JPT][hapmap]
rs2377127	1.00[JPT][hapmap]
rs370827	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3813297	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs3813298	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs383585	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs386288	0.96[EUR][1000 genomes]
rs400967	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs447317	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4634381	1.00[JPT][hapmap]
rs4895183	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4895184	0.82[CHB][hapmap]
rs4895347	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4895353	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4895354	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55821851	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs581887	0.94[EUR][1000 genomes]
rs635083	0.94[EUR][1000 genomes]
rs6860946	1.00[JPT][hapmap]
rs6861907	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6863802	0.84[YRI][hapmap]
rs6871241	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6874109	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6874399	1.00[JPT][hapmap]
rs6880144	1.00[JPT][hapmap]
rs6881583	0.82[AMR][1000 genomes]
rs6881776	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6886240	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6892437	1.00[JPT][hapmap]
rs73234489	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234502	0.80[EUR][1000 genomes]
rs73236920	0.82[AMR][1000 genomes]
rs7701819	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7709381	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7722027	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7726905	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7734815	1.00[JPT][hapmap]
rs849728	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv599562	chr5:118122504-118230640	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118143400-118178200	Weak transcription	Left Ventricle	heart
2	chr5:118158200-118176400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:118158400-118169200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:118158800-118160200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:118159600-118160200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:118159800-118160200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:118159800-118161800	Enhancers	Fetal Heart	heart
8	chr5:118160000-118160200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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