Variant report

Variant	rs1571033
Chromosome Location	chr9:116539755-116539756
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10817521	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10981930	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10981945	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981983	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981988	0.85[AMR][1000 genomes]
rs12551439	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1326324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1536967	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1590887	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16909454	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16910261	0.82[AMR][1000 genomes]
rs7032965	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs913078	0.81[ASN][1000 genomes]
rs9777523	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116539000-116551400	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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