Variant report

Variant	rs1572452
Chromosome Location	chr13:65125883-65125884
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12857606	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12874888	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1537913	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1537914	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544135	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1572453	0.86[EUR][1000 genomes]
rs17088301	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1953642	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2027211	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2152671	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2152672	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34692903	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34947748	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35734409	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4643182	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4884580	0.82[EUR][1000 genomes]
rs4884581	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs67144067	0.83[EUR][1000 genomes]
rs7981940	0.96[EUR][1000 genomes]
rs7991350	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7996338	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7997635	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7998011	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7999207	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9317432	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9528783	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9540144	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9540145	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9540147	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455914	chr13:64432922-65368490	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv561965	chr13:64432922-65368490	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3367739	chr13:64805577-65549276	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv900344	chr13:64868768-65193124	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv900346	chr13:64999866-65198145	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv428606	chr13:65008453-65158452	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv900348	chr13:65074137-65193124	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv900349	chr13:65117966-65193124	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv900350	chr13:65117966-65222862	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv900351	chr13:65117966-65229479	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:65123800-65126600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:65124000-65131200	Enhancers	NHDF-Ad	bronchial
3	chr13:65124600-65127800	Weak transcription	HMEC	breast
4	chr13:65125600-65126000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:65125600-65126400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr13:65125800-65126200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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