Variant report

Variant	rs1573249
Chromosome Location	chr1:61477582-61477583
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61475105..61478229-chr1:61481124..61483479,4	K562	blood:
2	chr1:61471301..61473154-chr1:61477141..61479867,2	K562	blood:
3	chr1:61476462..61479205-chr1:61494512..61496512,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11207692	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12130085	1.00[JPT][hapmap]
rs12404093	0.92[JPT][hapmap]
rs17121533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17376392	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4915584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4915585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4915725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4915726	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs904271	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs924274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61458200-61477600	Weak transcription	Left Ventricle	heart
2	chr1:61466600-61478800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr1:61472000-61479000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:61472400-61477600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:61472400-61477600	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:61472400-61477800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:61472400-61479000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:61472600-61477800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:61472600-61477800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:61473800-61478600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:61474000-61477800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr1:61474400-61480200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr1:61474600-61479000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr1:61475200-61478400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr1:61476600-61480000	Enhancers	Brain Germinal Matrix	brain
16	chr1:61476800-61477600	Enhancers	K562	blood
17	chr1:61476800-61477800	Enhancers	Fetal Brain Male	brain
18	chr1:61476800-61477800	Enhancers	Fetal Brain Female	brain
19	chr1:61476800-61478000	Enhancers	Fetal Heart	heart
20	chr1:61477000-61477600	Enhancers	Stomach Mucosa	stomach
21	chr1:61477200-61477800	Enhancers	Brain Substantia Nigra	brain
22	chr1:61477200-61479600	Enhancers	Aorta	Aorta
23	chr1:61477400-61477600	Weak transcription	Right Atrium	heart
24	chr1:61477400-61477800	Enhancers	Brain Angular Gyrus	brain
25	chr1:61477400-61477800	Enhancers	Brain Anterior Caudate	brain
26	chr1:61477400-61478000	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr1:61477400-61478000	Enhancers	Brain Cingulate Gyrus	brain

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