Variant report

Variant	rs1574576
Chromosome Location	chr13:67053289-67053290
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10507739	0.82[GIH][hapmap];0.81[JPT][hapmap]
rs12862479	0.87[ASN][1000 genomes]
rs12866298	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12867375	0.80[CHB][hapmap]
rs12868964	0.85[GIH][hapmap];0.81[JPT][hapmap]
rs12869568	0.88[ASN][1000 genomes]
rs12875111	0.93[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.81[TSI][hapmap];0.93[ASN][1000 genomes]
rs12877241	0.84[GIH][hapmap]
rs1932881	0.81[JPT][hapmap]
rs1932882	0.93[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1932883	0.88[GIH][hapmap];0.81[JPT][hapmap]
rs1932886	0.82[GIH][hapmap];0.81[JPT][hapmap]
rs2324915	0.81[JPT][hapmap]
rs34099737	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35628504	0.88[ASN][1000 genomes]
rs4144494	0.93[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs4379952	0.93[GIH][hapmap]
rs4393452	0.84[JPT][hapmap]
rs4883779	0.81[JPT][hapmap]
rs4884677	0.84[CHB][hapmap]
rs4884678	0.81[JPT][hapmap]
rs56083836	0.87[ASN][1000 genomes]
rs61957642	0.97[ASN][1000 genomes]
rs7319523	0.80[CHB][hapmap]
rs7993413	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9317595	0.81[JPT][hapmap]
rs9529074	0.93[ASN][1000 genomes]
rs9529076	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs9529083	0.90[GIH][hapmap]
rs9529086	0.80[CHB][hapmap];0.90[JPT][hapmap]
rs9529087	0.81[JPT][hapmap]
rs9529093	0.87[ASN][1000 genomes]
rs9540767	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9540770	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9540784	0.93[GIH][hapmap]
rs9540788	0.82[GIH][hapmap]
rs9540791	0.93[GIH][hapmap]
rs9540796	0.82[GIH][hapmap];0.81[JPT][hapmap]
rs9540797	0.88[ASN][1000 genomes]
rs9540800	0.88[GIH][hapmap];0.81[JPT][hapmap]
rs9540803	0.81[JPT][hapmap]
rs9540804	0.81[JPT][hapmap]
rs9540806	0.93[CHB][hapmap];0.95[JPT][hapmap]
rs9540809	0.81[JPT][hapmap]
rs9540812	0.88[GIH][hapmap];0.81[JPT][hapmap]
rs9540813	0.88[GIH][hapmap];0.81[JPT][hapmap]
rs9540817	0.87[JPT][hapmap]
rs9540820	0.83[ASN][1000 genomes]
rs9540821	0.85[GIH][hapmap]
rs9540824	0.81[GIH][hapmap]
rs9564319	0.89[JPT][hapmap]
rs9564320	0.81[JPT][hapmap]
rs9564321	0.81[JPT][hapmap]
rs9571595	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530416	chr13:66198235-67126195	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1053763	chr13:66210166-67184972	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv541811	chr13:66210166-67184972	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv932195	chr13:66215786-67215733	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv530723	chr13:66219650-67200316	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv1052017	chr13:66232288-67213033	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv534503	chr13:66287963-67126195	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv915828	chr13:66544825-67212201	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv1041133	chr13:66723731-67530595	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv1051051	chr13:66948744-67126296	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv900390	chr13:66990736-67094634	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv2757538	chr13:67005812-67119200	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv2759943	chr13:67005812-67119200	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv2422196	chr13:67041890-67295480	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv832639	chr13:67049800-67223701	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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