Variant report

Variant	rs157761
Chromosome Location	chr15:76796078-76796079
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs157757	0.87[CEU][hapmap]
rs157760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs157762	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs157763	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs157766	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs157768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs157769	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs157775	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs157777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs157778	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs157779	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs157788	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs157789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs166906	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs166933	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16968196	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs172244	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1810348	0.87[CEU][hapmap];0.89[CHB][hapmap]
rs182253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1875883	0.83[EUR][1000 genomes]
rs190771	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2078437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2439984	0.87[CEU][hapmap];0.92[YRI][hapmap]
rs2439992	0.87[CEU][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs2460158	0.85[CEU][hapmap]
rs2460161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs2468113	0.81[AFR][1000 genomes]
rs2468122	0.87[CEU][hapmap]
rs2468123	0.92[YRI][hapmap]
rs2468129	0.82[AFR][1000 genomes]
rs2469211	0.87[CEU][hapmap]
rs2469215	0.85[CEU][hapmap]
rs2469224	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2469554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs2469556	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2469573	0.87[CEU][hapmap]
rs2585730	0.87[CEU][hapmap]
rs280012	0.92[YRI][hapmap]
rs280013	0.87[CEU][hapmap]
rs283796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs283799	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs283802	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284884	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs284885	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs284893	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs284897	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs284898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs284901	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs284902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs284903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs284904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs284905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs284907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2930681	0.87[CEU][hapmap];0.92[YRI][hapmap]
rs2938695	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2944377	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2948703	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2956873	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2956875	0.87[CEU][hapmap]
rs2957560	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2957607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2957611	0.85[EUR][1000 genomes]
rs2957612	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2957613	1.00[CEU][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs387321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs403656	1.00[JPT][hapmap]
rs454381	0.86[ASN][1000 genomes]
rs480672	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4886490	0.86[CEU][hapmap];0.89[CHB][hapmap]
rs4886491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs4886492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs494268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs506000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8031378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8031672	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs874224	0.87[CEU][hapmap];0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv904400	chr15:76772062-77085283	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs157761	RP11-685G9.2	cis	Whole Blood	GTEx
rs157761	ISL2	Cis_1M	lymphoblastoid	RTeQTL
rs157761	ISL2	cis	Whole Blood	GTEx

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76725800-76812600	Weak transcription	Left Ventricle	heart
2	chr15:76785400-76799800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr15:76788000-76796600	Weak transcription	HSMM	muscle
4	chr15:76788200-76798400	Weak transcription	Dnd41	blood
5	chr15:76788400-76813600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr15:76789200-76796200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:76789200-76796200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:76789200-76796600	Weak transcription	Adipose Nuclei	Adipose
9	chr15:76789600-76796400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr15:76790000-76802000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:76790600-76796200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr15:76791000-76796200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr15:76791200-76806200	Weak transcription	Fetal Muscle Leg	muscle
14	chr15:76792000-76796400	Enhancers	Fetal Intestine Small	intestine
15	chr15:76792600-76798600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr15:76792600-76801800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr15:76793200-76796400	Enhancers	Fetal Intestine Large	intestine
18	chr15:76793800-76796600	Weak transcription	Ovary	ovary
19	chr15:76793800-76798600	Weak transcription	Placenta	Placenta
20	chr15:76793800-76799400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr15:76794000-76810400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:76794200-76798200	Weak transcription	Pancreas	Pancrea
23	chr15:76794200-76806400	Weak transcription	Gastric	stomach
24	chr15:76794400-76797200	Weak transcription	Lung	lung
25	chr15:76794600-76796200	Weak transcription	Liver	Liver
26	chr15:76794600-76796600	Weak transcription	Primary B cells from peripheral blood	blood
27	chr15:76794800-76796400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:76794800-76796400	Weak transcription	Fetal Thymus	thymus
29	chr15:76794800-76797200	Weak transcription	Thymus	Thymus
30	chr15:76794800-76801200	Weak transcription	Right Ventricle	heart
31	chr15:76795000-76796200	Enhancers	Duodenum Mucosa	Duodenum
32	chr15:76795000-76797200	Strong transcription	Primary T cells from cord blood	blood
33	chr15:76795200-76796200	Enhancers	NHEK	skin
34	chr15:76795200-76796800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr15:76795200-76797600	Weak transcription	Fetal Muscle Trunk	muscle
36	chr15:76795200-76798400	Weak transcription	Brain Angular Gyrus	brain
37	chr15:76795200-76806800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr15:76795400-76796400	Weak transcription	Primary B cells from cord blood	blood
39	chr15:76795400-76798200	Weak transcription	Esophagus	oesophagus
40	chr15:76795800-76796400	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr15:76795800-76810600	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links