Variant report

Variant	rs157771
Chromosome Location	chr15:76839485-76839486
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs1020280	0.81[AFR][1000 genomes]
rs10220790	0.83[AMR][1000 genomes]
rs12708522	0.83[AMR][1000 genomes]
rs1499019	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1499020	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1499022	0.83[AMR][1000 genomes]
rs157764	0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs157765	0.83[AMR][1000 genomes]
rs157767	0.83[AMR][1000 genomes]
rs157770	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157772	0.90[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157773	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157774	0.83[AMR][1000 genomes]
rs157781	0.83[AMR][1000 genomes]
rs157782	0.81[YRI][hapmap];0.83[AMR][1000 genomes]
rs157784	0.83[AMR][1000 genomes]
rs157786	0.83[AMR][1000 genomes]
rs157792	0.83[AMR][1000 genomes]
rs157793	0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs166905	0.83[AMR][1000 genomes]
rs166932	0.81[YRI][hapmap];0.83[AMR][1000 genomes]
rs185860	0.81[YRI][hapmap];0.83[AMR][1000 genomes]
rs1867196	0.90[YRI][hapmap]
rs1878877	0.83[AMR][1000 genomes]
rs190782	0.83[AMR][1000 genomes]
rs2015132	0.81[AFR][1000 genomes]
rs2120112	0.83[AMR][1000 genomes]
rs2404735	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2439983	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2454452	0.85[YRI][hapmap]
rs2456032	0.83[AMR][1000 genomes]
rs2456034	0.83[AMR][1000 genomes]
rs2456035	0.83[AMR][1000 genomes]
rs2456036	0.83[AMR][1000 genomes]
rs2456037	0.83[AMR][1000 genomes]
rs2456059	0.83[AMR][1000 genomes]
rs2459364	0.83[AMR][1000 genomes]
rs2460149	0.83[AMR][1000 genomes]
rs2460157	0.83[AMR][1000 genomes]
rs2468117	0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2468125	0.83[AMR][1000 genomes]
rs2469217	0.83[AMR][1000 genomes]
rs2469218	0.83[AMR][1000 genomes]
rs2469219	0.83[AMR][1000 genomes]
rs2469220	0.83[AMR][1000 genomes]
rs2469223	0.83[AMR][1000 genomes]
rs2469240	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2469243	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2469550	0.83[AMR][1000 genomes]
rs2469551	0.83[AMR][1000 genomes]
rs2469553	0.83[AMR][1000 genomes]
rs2469572	0.83[AMR][1000 genomes]
rs2469574	0.83[AMR][1000 genomes]
rs2516308	0.83[AMR][1000 genomes]
rs2585728	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs279991	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs279993	0.83[AMR][1000 genomes]
rs279994	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs279995	0.83[AMR][1000 genomes]
rs280004	0.83[AMR][1000 genomes]
rs280017	0.94[YRI][hapmap];0.81[AFR][1000 genomes]
rs280019	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs280021	0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs280022	0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs280027	0.95[YRI][hapmap]
rs280031	0.95[YRI][hapmap]
rs280034	0.95[YRI][hapmap]
rs280035	0.83[AMR][1000 genomes]
rs283786	0.83[AMR][1000 genomes]
rs283788	0.83[AMR][1000 genomes]
rs283790	0.83[AMR][1000 genomes]
rs283792	0.83[AMR][1000 genomes]
rs283794	0.81[YRI][hapmap];0.83[AMR][1000 genomes]
rs283797	0.83[AMR][1000 genomes]
rs283798	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs283800	0.83[AMR][1000 genomes]
rs284879	0.81[YRI][hapmap];0.83[AMR][1000 genomes]
rs284882	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs284887	0.83[AMR][1000 genomes]
rs284888	0.83[AMR][1000 genomes]
rs284889	0.83[AMR][1000 genomes]
rs284890	0.83[AMR][1000 genomes]
rs284896	0.81[YRI][hapmap]
rs284900	0.83[AMR][1000 genomes]
rs2930684	0.81[AFR][1000 genomes]
rs2938692	0.83[AMR][1000 genomes]
rs2938693	0.83[AMR][1000 genomes]
rs2938694	1.00[AMR][1000 genomes]
rs2938696	0.83[AMR][1000 genomes]
rs2938698	0.83[AMR][1000 genomes]
rs2944379	0.83[AMR][1000 genomes]
rs2944380	0.83[AMR][1000 genomes]
rs2948702	0.83[AMR][1000 genomes]
rs2956872	0.83[AMR][1000 genomes]
rs2957558	0.83[AMR][1000 genomes]
rs2957608	0.83[AMR][1000 genomes]
rs3099148	0.83[AMR][1000 genomes]
rs3102711	0.83[AMR][1000 genomes]
rs3102718	0.83[AMR][1000 genomes]
rs415439	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs426225	1.00[AMR][1000 genomes]
rs4886797	0.83[AMR][1000 genomes]
rs542148	0.83[AMR][1000 genomes]
rs560598	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs598011	0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6495202	0.83[AMR][1000 genomes]
rs654416	0.83[AMR][1000 genomes]
rs7164815	0.83[AMR][1000 genomes]
rs8040818	0.83[AMR][1000 genomes]
rs937734	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv904400	chr15:76772062-77085283	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1053924	chr15:76803849-77089079	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv471254	chr15:76811390-76978139	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv570021	chr15:76813920-76978139	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
8	nsv570022	chr15:76816015-76978139	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
9	nsv904401	chr15:76816015-77085283	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1042514	chr15:76838221-76906382	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76805600-76845800	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links