Variant report

Variant	rs157777
Chromosome Location	chr15:76758760-76758761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs157757	0.87[CEU][hapmap]
rs157760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs157761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs157763	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs157766	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs157768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs157769	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs157778	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs157779	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs157789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1810348	0.87[CEU][hapmap];0.90[CHB][hapmap]
rs182253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs190771	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2078437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2439984	0.87[CEU][hapmap]
rs2439992	0.87[CEU][hapmap]
rs2456066	0.87[CEU][hapmap]
rs2460158	0.85[CEU][hapmap]
rs2460161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2468122	0.87[CEU][hapmap]
rs2469211	0.87[CEU][hapmap]
rs2469214	0.87[CEU][hapmap]
rs2469215	0.85[CEU][hapmap]
rs2469539	0.87[CEU][hapmap]
rs2469554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2469573	0.87[CEU][hapmap]
rs283796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs283802	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs284898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs284902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs284903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs284904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs284905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs284907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2956875	0.87[CEU][hapmap]
rs2957560	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2957607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2957613	1.00[CEU][hapmap]
rs387321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs403656	1.00[JPT][hapmap]
rs480672	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4886490	0.86[CEU][hapmap];0.90[CHB][hapmap]
rs4886491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4886492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs494268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs506000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8031378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8031672	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs8042255	0.87[CEU][hapmap]
rs874224	0.87[CEU][hapmap];0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76711600-76767200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:76720800-76763600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:76725800-76812600	Weak transcription	Left Ventricle	heart
4	chr15:76742800-76762400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr15:76750400-76763800	Weak transcription	Placenta	Placenta
6	chr15:76753200-76762800	Weak transcription	Esophagus	oesophagus
7	chr15:76753400-76760800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr15:76753600-76761600	Weak transcription	Adipose Nuclei	Adipose
9	chr15:76753800-76764400	Weak transcription	Fetal Intestine Large	intestine
10	chr15:76754000-76764400	Weak transcription	Brain Hippocampus Middle	brain
11	chr15:76754200-76763600	Weak transcription	Pancreas	Pancrea
12	chr15:76754400-76763600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:76754800-76762000	Weak transcription	Ovary	ovary
14	chr15:76754800-76764400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr15:76755200-76761200	Weak transcription	Brain Anterior Caudate	brain
16	chr15:76755600-76764600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr15:76757400-76760200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:76757600-76759600	ZNF genes & repeats	Primary T cells from cord blood	blood
19	chr15:76757800-76759400	ZNF genes & repeats	Liver	Liver
20	chr15:76757800-76765200	Weak transcription	Aorta	Aorta
21	chr15:76758000-76759000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
22	chr15:76758200-76759200	ZNF genes & repeats	Psoas Muscle	Psoas
23	chr15:76758400-76765600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr15:76758600-76761200	Weak transcription	Fetal Heart	heart
25	chr15:76758600-76762400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links