Variant report

Variant	rs1579214
Chromosome Location	chr7:126312223-126312224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126309021..126312996-chr7:126337447..126339848,3	K562	blood:
2	7:126312146-126318123..7:127233104-127239235	H1-hESC	embryonic stem cell:	embryo
3	7:126312146-126318123..7:127009457-127018926	GM12878	blood:
4	7:126312146-126318123..7:126890676-126899918	H1-hESC	embryonic stem cell:	embryo
5	7:126312146-126318123..7:127225864-127233104	GM12878	blood:
6	7:126085913-126088095..7:126312146-126318123	GM12878	blood:
7	chr7:126310132..126312996-chr7:126337447..126339045,2	K562	blood:
8	chr7:126310480..126313047-chr7:126341094..126342688,2	K562	blood:
9	7:126312146-126318123..7:127031401-127034711	GM12878	blood:
10	7:126312146-126318123..7:127221502-127225864	H1-hESC	embryonic stem cell:	embryo

No data

Variant related genes	Relation type
ENSG00000179562	Chromatin interaction
ENSG00000048405	Chromatin interaction
ENSG00000106328	Chromatin interaction
ENSG00000179603	Chromatin interaction
ENSG00000004059	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1008905	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1024417	0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1024418	0.92[ASN][1000 genomes]
rs10279616	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11760596	0.92[CHB][hapmap];0.83[CHD][hapmap];0.80[JPT][hapmap]
rs12538632	0.92[CHB][hapmap];0.80[JPT][hapmap]
rs12667118	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12706739	0.82[CEU][hapmap];0.92[CHB][hapmap];0.86[CHD][hapmap];0.80[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap]
rs13234319	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs13241983	0.82[CEU][hapmap];0.92[CHB][hapmap]
rs13243112	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1419482	1.00[ASW][hapmap];0.82[CEU][hapmap];0.92[CHB][hapmap];0.86[CHD][hapmap];0.80[JPT][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap]
rs1419483	0.90[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs1815973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2073863	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs2237761	0.83[CHD][hapmap]
rs2237764	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2237765	1.00[CEU][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2283068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2283069	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2299460	0.92[CHB][hapmap];0.83[CHD][hapmap];0.80[JPT][hapmap]
rs2299492	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2299493	0.83[CHD][hapmap]
rs2299497	0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2299498	0.86[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2299514	0.89[MEX][hapmap]
rs2402820	0.83[CHD][hapmap]
rs2896374	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34261190	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35009695	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3808152	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3808153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3824011	0.84[ASN][1000 genomes]
rs4728051	0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs4731317	0.92[CHB][hapmap];0.86[CHD][hapmap];0.80[JPT][hapmap]
rs4731321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6960925	0.92[CHB][hapmap]
rs7803165	0.83[CHB][hapmap]
rs9969183	0.89[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032108	chr7:126278349-126362592	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv5939	chr7:126279355-126322778	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126309800-126314600	Weak transcription	K562	blood

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