Variant report

Variant	rs1580819
Chromosome Location	chr3:25161230-25161231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11129182	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1580816	0.84[AFR][1000 genomes]
rs1609781	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909525	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2062486	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4312625	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4386457	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4858710	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6765032	0.82[AFR][1000 genomes]
rs7636453	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25159200-25162400	Weak transcription	Stomach Mucosa	stomach
2	chr3:25159800-25161600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:25160000-25161400	Weak transcription	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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