Variant report
| Variant | rs1582351 |
|---|---|
| Chromosome Location | chr3:34711925-34711926 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1345384 | 0.81[AMR][1000 genomes] |
| rs1420516 | 0.81[AMR][1000 genomes] |
| rs1420517 | 0.81[AMR][1000 genomes] |
| rs1520634 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1520644 | 0.81[EUR][1000 genomes] |
| rs1520646 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1520647 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1581334 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1851057 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs1894935 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2080425 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2160468 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2884476 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4678701 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6550287 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6550288 | 0.91[EUR][1000 genomes] |
| rs6550289 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6550292 | 0.81[AMR][1000 genomes] |
| rs6762093 | 0.83[EUR][1000 genomes] |
| rs6799184 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6803249 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7624722 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7625714 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7625770 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7629903 | 0.81[EUR][1000 genomes] |
| rs7636733 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs918085 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv519548 | chr3:34683998-34718800 | Weak transcription Enhancers Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 2 | esv1816528 | chr3:34683998-34757534 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 3 | nsv525435 | chr3:34698297-34718800 | Enhancers Flanking Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:34711400-34718000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
